Plasmid CP098967.1

Sequence

Nucleotide Information

Accession CP098967.1
Description Escherichia coli strain RHB46-C23 plasmid unnamed2, complete sequence
Source insd
Topology circular
Length 1549 bp
GC Content 0.51 %
Created at NCBI April 13, 2023



Assembly

Genome Data Information

Accession GCA_029721175.1
Assembly Coverage 155


Biosample

Curated Collection Information
Accession 15488717

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled faeces sample collected from floor of poultry farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP069466.1 See Comparison
NZ_CP060064.1 See Comparison
NZ_CP060060.1 See Comparison
NZ_CP099343.1 See Comparison
NZ_CP100492.1 See Comparison
NZ_CP100492.1 See Comparison
NZ_CP075714.1 See Comparison
NZ_CP075631.1 See Comparison
NZ_CP076311.1 See Comparison
NZ_KM107846.1 See Comparison
NZ_CP060064.1 See Comparison
NZ_CP060060.1 See Comparison
CP077269.1 See Comparison
NC_017650.1 See Comparison
NZ_CP128887.1 See Comparison
NZ_OZ040557.1 See Comparison
NZ_CP148356.1 See Comparison
NZ_AP027587.1 See Comparison
NZ_CP069466.1 See Comparison
NZ_CP099343.1 See Comparison
CP098967.1 See Comparison
CP077269.1 See Comparison
NZ_OZ040557.1 See Comparison
NZ_CP075714.1 See Comparison
NZ_CP075631.1 See Comparison
NZ_CP076311.1 See Comparison
NC_017650.1 See Comparison
NZ_CP128887.1 See Comparison
NZ_CP148356.1 See Comparison
NZ_OZ040557.1 See Comparison
NZ_AP027587.1 See Comparison
NZ_CP060064.1 See Comparison
NZ_CP060060.1 See Comparison
NZ_CP099343.1 See Comparison
NZ_CP075714.1 See Comparison
NZ_CP075631.1 See Comparison
NZ_CP076311.1 See Comparison
NZ_KM107846.1 See Comparison
NZ_CP069466.1 See Comparison
NZ_CP100492.1 See Comparison
CP077269.1 See Comparison
NC_017650.1 See Comparison
NZ_CP128887.1 See Comparison
NZ_CP069466.1 See Comparison
NZ_AP027587.1 See Comparison
NZ_CP148356.1 See Comparison
NZ_KM107846.1 See Comparison
NZ_CP100492.1 See Comparison
NZ_CP060064.1 See Comparison
NZ_CP060060.1 See Comparison
NZ_CP099343.1 See Comparison
NZ_CP076311.1 See Comparison
CP077269.1 See Comparison
NC_017650.1 See Comparison
NZ_CP075714.1 See Comparison
NZ_CP075631.1 See Comparison
NZ_CP060064.1 See Comparison
NZ_OZ040557.1 See Comparison
NZ_CP148356.1 See Comparison
NZ_KM107846.1 See Comparison
NZ_CP128887.1 See Comparison
NZ_AP027587.1 See Comparison
NZ_CP069466.1 See Comparison
NZ_CP060060.1 See Comparison
NZ_CP099343.1 See Comparison
CP077269.1 See Comparison
NZ_CP100492.1 See Comparison
NZ_CP075714.1 See Comparison
NZ_CP075631.1 See Comparison
NZ_CP076311.1 See Comparison
NZ_CP128887.1 See Comparison
NC_017650.1 See Comparison
NZ_KM107846.1 See Comparison
NZ_OZ040557.1 See Comparison
NZ_CP148356.1 See Comparison
NZ_AP027587.1 See Comparison
NZ_CP060064.1 See Comparison
NZ_CP069466.1 See Comparison
NZ_CP060060.1 See Comparison
NZ_CP099343.1 See Comparison
CP077269.1 See Comparison
NZ_CP100492.1 See Comparison
NZ_CP075714.1 See Comparison
NZ_CP075631.1 See Comparison
NZ_CP076311.1 See Comparison
NZ_KM107846.1 See Comparison
NZ_CP128887.1 See Comparison
NC_017650.1 See Comparison
NZ_OZ040557.1 See Comparison
NZ_CP148356.1 See Comparison
NZ_AP027587.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore