Plasmid NZ_CP123234.1

Sequence

Nucleotide Information

Accession NZ_CP123234.1
Description Escherichia coli strain 5132 plasmid pMB11100_3, complete sequence
Source refseq
Topology circular
Length 5631 bp
GC Content 0.47 %
Created at NCBI April 25, 2023



Assembly

Genome Data Information

Accession GCF_029855145.1
Assembly Coverage 106


Biosample

Curated Collection Information
Accession 32977680

PLASMID INFORMATION
Genotype ST1193

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP145640.1 See Comparison
NZ_CP145675.1 See Comparison
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NZ_CP128884.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP124486.1 See Comparison
CP123645.1 See Comparison
NZ_CP124379.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
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NZ_CP148456.1 See Comparison
NZ_CP140626.1 See Comparison
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NZ_CP054347.1 See Comparison
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NZ_CP148456.1 See Comparison
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CP063723.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP059951.1 See Comparison
NZ_CP116081.1 See Comparison
NZ_CP116120.1 See Comparison
CP067971.1 See Comparison
NZ_CP103539.1 See Comparison
CP093123.1 See Comparison
CP093110.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP082934.1 See Comparison
NZ_CP055081.1 See Comparison
CP088798.1 See Comparison
CP088441.1 See Comparison
NZ_CP069697.1 See Comparison
CP082579.1 See Comparison
NZ_CP049841.1 See Comparison
CP077247.1 See Comparison
NZ_CP049850.1 See Comparison
NZ_CP075857.1 See Comparison
CP077382.1 See Comparison
CP077330.1 See Comparison
NZ_CP035725.1 See Comparison
NZ_CP018985.1 See Comparison
NZ_CP014319.1 See Comparison
NZ_CP011138.1 See Comparison
NC_022662.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore