Plasmid NZ_LR898879.1

Sequence

Nucleotide Information

Accession NZ_LR898879.1
Description Escherichia coli strain MSB1_4I isolate MSB1_4I plasmid 6, complete sequence
Source refseq
Topology circular
Length 5631 bp
GC Content 0.47 %
Created at NCBI Nov. 19, 2020



Assembly

Genome Data Information

Accession GCF_905071835.1
Assembly Coverage 59


Biosample

Curated Collection Information
Accession 4089361

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query healthy
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP035725.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison
NZ_OY757125.1 See Comparison
OY754449.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP128884.1 See Comparison
NZ_CP127313.1 See Comparison
CP123645.1 See Comparison
NZ_CP124486.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
NZ_CP124379.1 See Comparison
NZ_CP123234.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_CP138469.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_CP146562.1 See Comparison
NZ_CP145675.1 See Comparison
NZ_CP140626.1 See Comparison
NZ_CP054347.1 See Comparison
NZ_CP043665.1 See Comparison
NZ_LT985311.1 See Comparison
NZ_CP069914.1 See Comparison
NZ_CP070167.1 See Comparison
NZ_CP070138.1 See Comparison
NZ_CP069868.1 See Comparison
NZ_CP069591.1 See Comparison
NZ_CP046543.1 See Comparison
NZ_OP242257.1 See Comparison
CP063734.1 See Comparison
CP063723.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP059951.1 See Comparison
NZ_CP116081.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP082934.1 See Comparison
NZ_CP103539.1 See Comparison
NZ_CP116120.1 See Comparison
CP067971.1 See Comparison
NZ_CP055081.1 See Comparison
CP093123.1 See Comparison
CP093110.1 See Comparison
CP082579.1 See Comparison
CP088798.1 See Comparison
CP088441.1 See Comparison
NZ_CP049841.1 See Comparison
NZ_CP049850.1 See Comparison
NZ_CP014319.1 See Comparison
NZ_CP075857.1 See Comparison
CP077330.1 See Comparison
CP077247.1 See Comparison
NZ_CP069697.1 See Comparison
NZ_CP018985.1 See Comparison
NZ_CP035482.1 See Comparison
NZ_CP011138.1 See Comparison
NC_022662.1 See Comparison
OY754449.1 See Comparison
NZ_CP035725.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_OY757125.1 See Comparison
NZ_CP124486.1 See Comparison
NZ_CP128884.1 See Comparison
CP123645.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP127313.1 See Comparison
CP125067.1 See Comparison
NZ_CP124379.1 See Comparison
CP125056.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_CP123234.1 See Comparison
CP082579.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_CP146562.1 See Comparison
NZ_CP054347.1 See Comparison
NZ_LT985311.1 See Comparison
NZ_CP046543.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP059951.1 See Comparison
NZ_OP242257.1 See Comparison
NZ_CP116081.1 See Comparison
NZ_CP116120.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP082934.1 See Comparison
NZ_CP103539.1 See Comparison
CP067971.1 See Comparison
NZ_CP055081.1 See Comparison
CP088441.1 See Comparison
NZ_CP075857.1 See Comparison
CP077330.1 See Comparison
CP077247.1 See Comparison
NZ_CP069697.1 See Comparison
NZ_CP018985.1 See Comparison
NZ_OY757125.1 See Comparison
OY754449.1 See Comparison
NZ_CP138469.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP145675.1 See Comparison
NZ_CP140626.1 See Comparison
NZ_CP043665.1 See Comparison
NZ_CP069914.1 See Comparison
NZ_CP070167.1 See Comparison
NZ_CP070138.1 See Comparison
NZ_CP069868.1 See Comparison
NZ_CP069591.1 See Comparison
CP063734.1 See Comparison
CP063723.1 See Comparison
CP093123.1 See Comparison
CP093110.1 See Comparison
CP088798.1 See Comparison
NZ_CP049850.1 See Comparison
NZ_CP049841.1 See Comparison
NZ_CP014319.1 See Comparison
NZ_CP011138.1 See Comparison
NC_022662.1 See Comparison
NZ_CP035725.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison
NZ_CP128884.1 See Comparison
CP123645.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP124379.1 See Comparison
NZ_CP127313.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_CP123234.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP138469.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP145675.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_CP146562.1 See Comparison
NZ_CP140626.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP054347.1 See Comparison
NZ_CP043665.1 See Comparison
NZ_CP069914.1 See Comparison
NZ_CP070167.1 See Comparison
NZ_CP070138.1 See Comparison
NZ_CP069868.1 See Comparison
NZ_CP069591.1 See Comparison
NZ_CP124486.1 See Comparison
NZ_LT985311.1 See Comparison
NZ_CP046543.1 See Comparison
CP063734.1 See Comparison
CP063723.1 See Comparison
NZ_CP059951.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_OP242257.1 See Comparison
NZ_CP116081.1 See Comparison
NZ_CP116120.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP082934.1 See Comparison
NZ_CP103539.1 See Comparison
CP082579.1 See Comparison
CP093123.1 See Comparison
CP093110.1 See Comparison
CP088441.1 See Comparison
CP067971.1 See Comparison
NZ_CP055081.1 See Comparison
CP088798.1 See Comparison
NZ_CP049850.1 See Comparison
NZ_CP049841.1 See Comparison
NZ_CP075857.1 See Comparison
CP077330.1 See Comparison
CP077247.1 See Comparison
NZ_CP069697.1 See Comparison
NC_022662.1 See Comparison
NZ_CP018985.1 See Comparison
NZ_CP014319.1 See Comparison
NZ_CP011138.1 See Comparison
NZ_LT985311.1 See Comparison
NZ_CP035725.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison
NZ_OY757125.1 See Comparison
OY754449.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP128884.1 See Comparison
NZ_CP127313.1 See Comparison
NZ_CP124379.1 See Comparison
NZ_CP138469.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_CP054347.1 See Comparison
CP123645.1 See Comparison
NZ_CP124486.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
NZ_CP123234.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP146562.1 See Comparison
NZ_CP145675.1 See Comparison
NZ_CP140626.1 See Comparison
NZ_CP069914.1 See Comparison
NZ_CP043665.1 See Comparison
NZ_CP070167.1 See Comparison
NZ_CP070138.1 See Comparison
NZ_CP069868.1 See Comparison
NZ_LR898879.1 See Comparison
NZ_CP069591.1 See Comparison
NZ_CP046543.1 See Comparison
NZ_OP242257.1 See Comparison
CP063734.1 See Comparison
CP063723.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP059951.1 See Comparison
NZ_CP116081.1 See Comparison
NZ_CP116120.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP035725.1 See Comparison
NZ_CP082934.1 See Comparison
CP093123.1 See Comparison
CP093110.1 See Comparison
CP088798.1 See Comparison
CP088441.1 See Comparison
CP082579.1 See Comparison
NZ_CP049850.1 See Comparison
NZ_CP049841.1 See Comparison
NZ_CP075857.1 See Comparison
CP077330.1 See Comparison
NZ_CP011138.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison
NZ_CP103539.1 See Comparison
CP067971.1 See Comparison
NZ_CP055081.1 See Comparison
CP077247.1 See Comparison
NZ_CP069697.1 See Comparison
NZ_CP018985.1 See Comparison
NZ_CP014319.1 See Comparison
NC_022662.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_CP054347.1 See Comparison
NZ_OY757125.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP128884.1 See Comparison
NZ_CP127313.1 See Comparison
NZ_CP124379.1 See Comparison
NZ_CP138469.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_CP140626.1 See Comparison
OY754449.1 See Comparison
CP123645.1 See Comparison
NZ_CP124486.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
NZ_CP123234.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP146562.1 See Comparison
NZ_CP145675.1 See Comparison
NZ_LT985311.1 See Comparison
NZ_CP043665.1 See Comparison
NZ_CP069591.1 See Comparison
NZ_CP069914.1 See Comparison
NZ_CP070167.1 See Comparison
NZ_CP070138.1 See Comparison
NZ_CP069868.1 See Comparison
NZ_CP046543.1 See Comparison
CP063734.1 See Comparison
CP063723.1 See Comparison
NZ_CP116081.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP059951.1 See Comparison
NZ_OP242257.1 See Comparison
NZ_CP116120.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP082934.1 See Comparison
CP067971.1 See Comparison
NZ_CP103539.1 See Comparison
CP093123.1 See Comparison
CP093110.1 See Comparison
NZ_CP055081.1 See Comparison
NZ_CP014319.1 See Comparison
NZ_CP049841.1 See Comparison
NZ_CP075857.1 See Comparison
NZ_CP069697.1 See Comparison
NZ_CP018985.1 See Comparison
CP088798.1 See Comparison
CP088441.1 See Comparison
CP082579.1 See Comparison
NZ_CP049850.1 See Comparison
CP077330.1 See Comparison
CP077247.1 See Comparison
NZ_CP011138.1 See Comparison
NC_022662.1 See Comparison
NZ_CP035725.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_CP145675.1 See Comparison
NZ_OY757125.1 See Comparison
OY754449.1 See Comparison
CP123645.1 See Comparison
NZ_CP124486.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
NZ_CP123234.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_CP138469.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP128884.1 See Comparison
NZ_CP127313.1 See Comparison
NZ_CP140626.1 See Comparison
NZ_CP054347.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_CP146562.1 See Comparison
CP088798.1 See Comparison
NZ_LT985311.1 See Comparison
NZ_CP043665.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP059951.1 See Comparison
NZ_CP116081.1 See Comparison
NZ_CP116120.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP082934.1 See Comparison
NZ_CP103539.1 See Comparison
CP093110.1 See Comparison
NZ_CP055081.1 See Comparison
NZ_CP124379.1 See Comparison
NZ_CP069914.1 See Comparison
NZ_CP070167.1 See Comparison
NZ_CP070138.1 See Comparison
NZ_CP069868.1 See Comparison
NZ_CP069591.1 See Comparison
NZ_CP046543.1 See Comparison
CP063734.1 See Comparison
CP063723.1 See Comparison
NZ_OP242257.1 See Comparison
CP093123.1 See Comparison
CP067971.1 See Comparison
CP077330.1 See Comparison
CP088441.1 See Comparison
CP082579.1 See Comparison
NZ_CP049850.1 See Comparison
NZ_CP049841.1 See Comparison
NZ_CP075857.1 See Comparison
CP077247.1 See Comparison
NZ_CP069697.1 See Comparison
NC_022662.1 See Comparison
NZ_CP018985.1 See Comparison
NZ_CP014319.1 See Comparison
NZ_CP011138.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore