Plasmid NZ_CP123235.1

Sequence

Nucleotide Information

Accession NZ_CP123235.1
Description Escherichia coli strain 5132 plasmid pMB11100_4, complete sequence
Source refseq
Topology circular
Length 5164 bp
GC Content 0.47 %
Created at NCBI April 25, 2023



Assembly

Genome Data Information

Accession GCF_029855145.1
Assembly Coverage 106


Biosample

Curated Collection Information
Accession 32977680

PLASMID INFORMATION
Genotype ST1193

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP055082.1 See Comparison
NZ_CP023837.1 See Comparison
NZ_CP115332.1 See Comparison
NZ_CP115332.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP151377.1 See Comparison
CP054322.1 See Comparison
NZ_CP048314.1 See Comparison
NZ_CP023837.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP151396.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_AP022209.1 See Comparison
NZ_CP055082.1 See Comparison
NZ_CP123235.1 See Comparison
CP054322.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP151396.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP151377.1 See Comparison
NZ_CP048314.1 See Comparison
NZ_AP022209.1 See Comparison
NZ_CP115332.1 See Comparison
NZ_CP055082.1 See Comparison
NZ_CP023837.1 See Comparison
NZ_CP055082.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP151396.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP151377.1 See Comparison
CP054322.1 See Comparison
NZ_AP022209.1 See Comparison
NZ_CP048314.1 See Comparison
NZ_CP115332.1 See Comparison
NZ_CP023837.1 See Comparison
CP054322.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP151396.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP151377.1 See Comparison
NZ_CP048314.1 See Comparison
NZ_AP022209.1 See Comparison
NZ_CP055082.1 See Comparison
CP054322.1 See Comparison
NZ_CP023837.1 See Comparison
NZ_CP115332.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP151396.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP151377.1 See Comparison
CP054322.1 See Comparison
NZ_CP048314.1 See Comparison
NZ_AP022209.1 See Comparison
NZ_CP023837.1 See Comparison
NZ_CP115332.1 See Comparison
NZ_CP055082.1 See Comparison
NZ_CP151353.1 See Comparison
NZ_CP151396.1 See Comparison
NZ_CP151305.1 See Comparison
NZ_CP151339.1 See Comparison
NZ_CP151377.1 See Comparison
NZ_CP048314.1 See Comparison
NZ_AP022209.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore