Plasmid NZ_CP046543.1

Sequence

Nucleotide Information

Accession NZ_CP046543.1
Description Escherichia coli strain FHI_NMBU_10 plasmid pFHI_NMBU_10_04, complete sequence
Source refseq
Topology circular
Length 5631 bp
GC Content 0.47 %
Created at NCBI Feb. 9, 2021



Assembly

Genome Data Information

Accession GCF_016803915.1
Assembly Coverage 62.21


Biosample

Curated Collection Information

Accession 13476489

PLASMID INFORMATION
Genotype ST829
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query 59.935N;10.746E
Original Query Type coordinates
Coordinates (Lat/Lon) 59.94/10.75
Address Griffenfeldts gate, Lovisenberg, St. Hanshaugen, Oslo, 0456, Norway

ECOSYSTEM
Original Query Homo sapiens,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Diarrhea
DOID/SYMP
  • Diarrhea (DOID:13250 )
  • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization




Similar Plasmids

based on Mash distance

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NZ_CP055081.1 See Comparison
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NZ_CP018985.1 See Comparison
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NZ_CP035474.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison
NZ_CP128884.1 See Comparison
NZ_OY757125.1 See Comparison
OY754449.1 See Comparison
OY754440.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP127313.1 See Comparison
CP123645.1 See Comparison
NZ_CP124486.1 See Comparison
NZ_CP103539.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
NZ_CP123234.1 See Comparison
NZ_CP138469.1 See Comparison
NZ_CP054347.1 See Comparison
NZ_LT985311.1 See Comparison
NZ_CP043665.1 See Comparison
NZ_CP069591.1 See Comparison
NZ_LR898879.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP059951.1 See Comparison
NZ_OP242257.1 See Comparison
NZ_CP116081.1 See Comparison
NZ_CP116120.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP082934.1 See Comparison
NZ_CP124379.1 See Comparison
NZ_OZ040718.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_CP146562.1 See Comparison
NZ_CP145640.1 See Comparison
NZ_CP145675.1 See Comparison
NZ_AP027567.1 See Comparison
NZ_AP027559.1 See Comparison
NZ_CP140626.1 See Comparison
NZ_CP069914.1 See Comparison
NZ_CP070167.1 See Comparison
NZ_CP070138.1 See Comparison
NZ_CP069868.1 See Comparison
CP063734.1 See Comparison
CP063723.1 See Comparison
NZ_CP069697.1 See Comparison
CP093123.1 See Comparison
CP093110.1 See Comparison
NZ_CP055081.1 See Comparison
CP082579.1 See Comparison
CP067971.1 See Comparison
CP088798.1 See Comparison
CP088441.1 See Comparison
NZ_CP049850.1 See Comparison
NZ_CP049841.1 See Comparison
NZ_CP075857.1 See Comparison
CP077382.1 See Comparison
CP077330.1 See Comparison
CP077247.1 See Comparison
NZ_CP018985.1 See Comparison
NZ_CP014319.1 See Comparison
NZ_CP011138.1 See Comparison
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NZ_CP138469.1 See Comparison
NZ_CP035725.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison
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OY754449.1 See Comparison
OY754440.1 See Comparison
NZ_CP124486.1 See Comparison
NZ_CP124379.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP128884.1 See Comparison
NZ_CP127313.1 See Comparison
CP123645.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
NZ_CP123234.1 See Comparison
NZ_OZ040718.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_CP146562.1 See Comparison
NZ_CP145640.1 See Comparison
NZ_CP145675.1 See Comparison
NZ_AP027567.1 See Comparison
NZ_AP027559.1 See Comparison
NZ_CP054347.1 See Comparison
NZ_CP140626.1 See Comparison
NZ_LT985311.1 See Comparison
NZ_CP043665.1 See Comparison
NZ_CP069591.1 See Comparison
NZ_LR898879.1 See Comparison
NZ_CP069914.1 See Comparison
NZ_CP070167.1 See Comparison
NZ_CP070138.1 See Comparison
NZ_CP069868.1 See Comparison
NZ_OP242257.1 See Comparison
CP063734.1 See Comparison
CP063723.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP059951.1 See Comparison
NZ_CP116120.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP049850.1 See Comparison
NZ_CP082934.1 See Comparison
NZ_CP103539.1 See Comparison
CP067971.1 See Comparison
NZ_CP055081.1 See Comparison
CP088798.1 See Comparison
CP088441.1 See Comparison
NZ_CP116081.1 See Comparison
CP093123.1 See Comparison
CP093110.1 See Comparison
NZ_CP049841.1 See Comparison
NZ_CP075857.1 See Comparison
CP077382.1 See Comparison
CP077330.1 See Comparison
CP077247.1 See Comparison
NZ_CP035725.1 See Comparison
NZ_CP069697.1 See Comparison
NZ_CP018985.1 See Comparison
NZ_CP014319.1 See Comparison
NZ_CP011138.1 See Comparison
NC_022662.1 See Comparison
CP082579.1 See Comparison
NZ_CP128884.1 See Comparison
NZ_OY757125.1 See Comparison
OY754449.1 See Comparison
OY754440.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison
NZ_CP127313.1 See Comparison
CP123645.1 See Comparison
NZ_CP124486.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
NZ_CP124379.1 See Comparison
NZ_CP123234.1 See Comparison
NZ_CP138469.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_AP027567.1 See Comparison
NZ_AP027559.1 See Comparison
NZ_CP140626.1 See Comparison
NZ_OZ040718.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP146562.1 See Comparison
NZ_CP145640.1 See Comparison
NZ_CP145675.1 See Comparison
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NZ_CP043665.1 See Comparison
NZ_CP069914.1 See Comparison
NZ_CP070167.1 See Comparison
NZ_CP070138.1 See Comparison
NZ_CP069868.1 See Comparison
NZ_CP054347.1 See Comparison
NZ_LT985311.1 See Comparison
NZ_CP069591.1 See Comparison
NZ_CP116081.1 See Comparison
CP063734.1 See Comparison
CP063723.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP059951.1 See Comparison
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NZ_CP116120.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP055081.1 See Comparison
NZ_CP082934.1 See Comparison
NZ_CP103539.1 See Comparison
CP093123.1 See Comparison
CP093110.1 See Comparison
CP088798.1 See Comparison
CP088441.1 See Comparison
NZ_CP049850.1 See Comparison
CP067971.1 See Comparison
CP082579.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP049841.1 See Comparison
CP077382.1 See Comparison
CP077330.1 See Comparison
CP077247.1 See Comparison
NZ_CP069697.1 See Comparison
NZ_CP018985.1 See Comparison
NZ_CP011138.1 See Comparison
NC_022662.1 See Comparison
NZ_CP035725.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_OY757125.1 See Comparison
NZ_CP075857.1 See Comparison
NZ_CP014319.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison
OY754449.1 See Comparison
OY754440.1 See Comparison
NZ_CP124486.1 See Comparison
NZ_CP128884.1 See Comparison
CP123645.1 See Comparison
NZ_CP127313.1 See Comparison
CP063734.1 See Comparison
NZ_CP124379.1 See Comparison
NZ_CP123234.1 See Comparison
NZ_OZ040718.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_CP138469.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_CP146562.1 See Comparison
NZ_CP140626.1 See Comparison
NZ_CP069914.1 See Comparison
NZ_CP070167.1 See Comparison
NZ_CP070138.1 See Comparison
NZ_CP069868.1 See Comparison
NZ_CP069591.1 See Comparison
NZ_LR898879.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP145640.1 See Comparison
NZ_CP145675.1 See Comparison
NZ_AP027567.1 See Comparison
NZ_AP027559.1 See Comparison
NZ_CP054347.1 See Comparison
NZ_LT985311.1 See Comparison
NZ_CP043665.1 See Comparison
NZ_CP046543.1 See Comparison
CP063723.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP059951.1 See Comparison
NZ_CP116081.1 See Comparison
NZ_CP116120.1 See Comparison
NZ_OP242257.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP082934.1 See Comparison
CP093123.1 See Comparison
CP093110.1 See Comparison
CP067971.1 See Comparison
CP088798.1 See Comparison
CP088441.1 See Comparison
CP082579.1 See Comparison
NZ_CP049841.1 See Comparison
NZ_CP103539.1 See Comparison
NZ_CP055081.1 See Comparison
NZ_CP049850.1 See Comparison
NZ_CP075857.1 See Comparison
CP077382.1 See Comparison
CP077330.1 See Comparison
CP077247.1 See Comparison
NZ_CP018985.1 See Comparison
NZ_CP069697.1 See Comparison
NZ_CP014319.1 See Comparison
OY754449.1 See Comparison
NZ_CP011138.1 See Comparison
NC_022662.1 See Comparison
NZ_CP035725.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison
NZ_OY757125.1 See Comparison
OY754440.1 See Comparison
NZ_CP049841.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP128884.1 See Comparison
NZ_CP124379.1 See Comparison
NZ_OZ040718.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP145640.1 See Comparison
NZ_CP145675.1 See Comparison
NZ_AP027559.1 See Comparison
NZ_CP054347.1 See Comparison
NZ_LT985311.1 See Comparison
CP063734.1 See Comparison
CP063723.1 See Comparison
NZ_OP242257.1 See Comparison
NZ_CP103539.1 See Comparison
CP067971.1 See Comparison
NZ_CP055081.1 See Comparison
CP088798.1 See Comparison
CP082579.1 See Comparison
NZ_CP127313.1 See Comparison
CP123645.1 See Comparison
NZ_CP124486.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
NZ_CP123234.1 See Comparison
NZ_CP138469.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_CP146562.1 See Comparison
NZ_AP027567.1 See Comparison
NZ_CP140626.1 See Comparison
NZ_CP043665.1 See Comparison
NZ_CP069914.1 See Comparison
NZ_CP070167.1 See Comparison
NZ_CP070138.1 See Comparison
NZ_CP069868.1 See Comparison
NZ_CP069591.1 See Comparison
NZ_LR898879.1 See Comparison
NZ_CP051618.1 See Comparison
NZ_CP059951.1 See Comparison
NZ_CP116081.1 See Comparison
NZ_CP116120.1 See Comparison
NZ_CP095508.1 See Comparison
NZ_CP095523.1 See Comparison
NZ_CP082934.1 See Comparison
CP093123.1 See Comparison
CP093110.1 See Comparison
CP088441.1 See Comparison
NZ_CP075857.1 See Comparison
NZ_CP049850.1 See Comparison
CP077382.1 See Comparison
CP077330.1 See Comparison
CP077247.1 See Comparison
NZ_CP069697.1 See Comparison
NZ_CP018985.1 See Comparison
NZ_CP014319.1 See Comparison
NZ_CP011138.1 See Comparison
NZ_CP035725.1 See Comparison
NC_022662.1 See Comparison
NZ_CP035474.1 See Comparison
NZ_CP035521.1 See Comparison
NZ_CP035482.1 See Comparison
NZ_CP138469.1 See Comparison
NZ_CP129808.1 See Comparison
NZ_CP128884.1 See Comparison
NZ_CP127313.1 See Comparison
CP123645.1 See Comparison
NZ_CP124486.1 See Comparison
CP125067.1 See Comparison
CP125056.1 See Comparison
NZ_CP124379.1 See Comparison
NZ_CP123234.1 See Comparison
NZ_OZ040718.1 See Comparison
NZ_OZ039047.1 See Comparison
NZ_OY757125.1 See Comparison
OY754449.1 See Comparison
OY754440.1 See Comparison
NZ_CP148456.1 See Comparison
NZ_CP147553.1 See Comparison
NZ_CP146573.1 See Comparison
NZ_CP146562.1 See Comparison
NZ_CP145640.1 See Comparison
NZ_CP145675.1 See Comparison
NZ_AP027567.1 See Comparison
NZ_CP054347.1 See Comparison
NZ_AP027559.1 See Comparison
NZ_CP140626.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore