Plasmid NZ_CP122628.1

Sequence

Nucleotide Information

Accession NZ_CP122628.1
Description Escherichia coli strain ETEC4089 plasmid unnamed3, complete sequence
Source refseq
Topology circular
Length 6647 bp
GC Content 0.49 %
Created at NCBI May 17, 2023



Assembly

Genome Data Information

Accession GCF_030013125.1
Assembly Coverage 138


Biosample

Curated Collection Information
Accession 32549665

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Belgium
Original Query Type name
Coordinates (Lat/Lon) 50.64/4.67
Address Belgium

ECOSYSTEM
Original Query Sus scrofa,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query enteric colibacillosis
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP127307.1 See Comparison
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OW849254.1 See Comparison
OW849392.1 See Comparison
NZ_AP024129.1 See Comparison
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OW849281.1 See Comparison
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NZ_CP127253.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_CP115373.1 See Comparison
NZ_CP122937.1 See Comparison
NZ_CP124432.1 See Comparison
NZ_CP122632.1 See Comparison
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NZ_CP149310.1 See Comparison
NZ_CP131912.1 See Comparison
NZ_CP070126.1 See Comparison
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NZ_CP055679.1 See Comparison
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CP099241.1 See Comparison
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NZ_CP101204.1 See Comparison
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OW968068.1 See Comparison
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NZ_CP055117.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_MN868651.1 See Comparison
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NZ_CP060978.1 See Comparison
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NZ_AP024129.1 See Comparison
CP077288.1 See Comparison
NZ_CP032070.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP018943.1 See Comparison
NZ_CP010175.1 See Comparison
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NZ_CP016584.1 See Comparison
NZ_CP016519.1 See Comparison
NZ_CP016513.1 See Comparison
NZ_CP041097.1 See Comparison
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OY856298.1 See Comparison
NZ_OZ038592.1 See Comparison
NZ_CP115373.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_CP124432.1 See Comparison
NZ_CP122937.1 See Comparison
NZ_CP122632.1 See Comparison
CP124980.1 See Comparison
NZ_OZ040493.1 See Comparison
NZ_CP131912.1 See Comparison
CP156949.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_CP149310.1 See Comparison
CP057858.1 See Comparison
NZ_CP055679.1 See Comparison
NZ_CP055604.1 See Comparison
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NZ_LC438465.1 See Comparison
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NZ_AP022165.1 See Comparison
CP099235.1 See Comparison
CP099241.1 See Comparison
NZ_CP119752.1 See Comparison
NZ_CP057102.1 See Comparison
NZ_OP242316.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP104597.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_CP101204.1 See Comparison
AP026517.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_CP019025.1 See Comparison
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OW968068.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
OW849254.1 See Comparison
NZ_CP097202.1 See Comparison
NZ_CP086497.1 See Comparison
NZ_CP086507.1 See Comparison
NZ_CP086517.1 See Comparison
NZ_AP024129.1 See Comparison
CP077348.1 See Comparison
CP077288.1 See Comparison
NZ_CP080060.1 See Comparison
OW849392.1 See Comparison
NZ_CP086477.1 See Comparison
NZ_CP086487.1 See Comparison
NZ_CP060978.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP055117.1 See Comparison
NZ_CP091536.1 See Comparison
CP090271.1 See Comparison
NZ_MN868651.1 See Comparison
CP088359.1 See Comparison
NZ_CP032070.1 See Comparison
NZ_CP018943.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP012628.1 See Comparison
NZ_CP016584.1 See Comparison
NZ_CP016519.1 See Comparison
NZ_CP016513.1 See Comparison
NZ_CP115373.1 See Comparison
OY856305.1 See Comparison
OY856298.1 See Comparison
NZ_CP122937.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_CP124432.1 See Comparison
NZ_CP122632.1 See Comparison
CP124980.1 See Comparison
CP156949.1 See Comparison
NZ_OZ040493.1 See Comparison
NZ_OZ038592.1 See Comparison
CP057858.1 See Comparison
NZ_CP131912.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_AP027656.1 See Comparison
NZ_AP027787.1 See Comparison
NZ_AP027853.1 See Comparison
NZ_CP055679.1 See Comparison
NZ_CP055604.1 See Comparison
CP057847.1 See Comparison
CP057624.1 See Comparison
NZ_LC438465.1 See Comparison
NZ_CP070126.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP119752.1 See Comparison
NZ_CP062911.1 See Comparison
NZ_CP057102.1 See Comparison
CP099229.1 See Comparison
CP099235.1 See Comparison
CP099241.1 See Comparison
CP066199.1 See Comparison
NZ_AP022165.1 See Comparison
NZ_OP242316.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP104597.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_OW968279.1 See Comparison
AP026517.1 See Comparison
NZ_CP101204.1 See Comparison
OW968068.1 See Comparison
OW849287.1 See Comparison
NZ_CP080060.1 See Comparison
OW849392.1 See Comparison
OW849281.1 See Comparison
OW849254.1 See Comparison
NZ_CP097202.1 See Comparison
NZ_CP086497.1 See Comparison
NZ_CP086477.1 See Comparison
NZ_CP086507.1 See Comparison
NZ_CP086487.1 See Comparison
NZ_CP086517.1 See Comparison
NZ_AP024129.1 See Comparison
NZ_CP060978.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP055117.1 See Comparison
NZ_CP091536.1 See Comparison
CP090271.1 See Comparison
NZ_MN868651.1 See Comparison
CP088359.1 See Comparison
NZ_CP016584.1 See Comparison
NZ_CP032070.1 See Comparison
CP077348.1 See Comparison
CP077288.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP018943.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP016519.1 See Comparison
NZ_CP016513.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP012628.1 See Comparison
NZ_CP124432.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP127307.1 See Comparison
OY856305.1 See Comparison
OY856298.1 See Comparison
NZ_CP115373.1 See Comparison
NZ_CP131912.1 See Comparison
NZ_CP122632.1 See Comparison
CP124980.1 See Comparison
CP156949.1 See Comparison
NZ_OZ038592.1 See Comparison
NZ_OZ040493.1 See Comparison
NZ_CP122937.1 See Comparison
NZ_CP070126.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_AP027656.1 See Comparison
NZ_AP027787.1 See Comparison
NZ_AP027853.1 See Comparison
NZ_LT985237.1 See Comparison
CP057858.1 See Comparison
NZ_CP055679.1 See Comparison
NZ_CP055604.1 See Comparison
CP057847.1 See Comparison
CP057624.1 See Comparison
NZ_LC438465.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_CP119752.1 See Comparison
CP066199.1 See Comparison
NZ_AP022165.1 See Comparison
NZ_CP062911.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP057102.1 See Comparison
CP099229.1 See Comparison
CP099235.1 See Comparison
CP099241.1 See Comparison
NZ_CP104597.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_OP242316.1 See Comparison
AP026517.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_CP086477.1 See Comparison
NZ_CP101204.1 See Comparison
NZ_OW968279.1 See Comparison
OW968068.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
OW849254.1 See Comparison
NZ_CP097202.1 See Comparison
NZ_CP086497.1 See Comparison
NZ_CP086507.1 See Comparison
NZ_CP086517.1 See Comparison
NZ_CP080060.1 See Comparison
OW849392.1 See Comparison
NZ_CP086487.1 See Comparison
NZ_CP060978.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP055117.1 See Comparison
NZ_CP091536.1 See Comparison
CP090271.1 See Comparison
NZ_MN868651.1 See Comparison
CP088359.1 See Comparison
CP077348.1 See Comparison
NZ_AP024129.1 See Comparison
CP077288.1 See Comparison
NZ_CP032070.1 See Comparison
NZ_CP115373.1 See Comparison
NZ_CP016584.1 See Comparison
NZ_CP016519.1 See Comparison
NZ_CP016513.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP018943.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP012628.1 See Comparison
OY856305.1 See Comparison
OY856298.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_CP124432.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP131912.1 See Comparison
NZ_CP122632.1 See Comparison
CP124980.1 See Comparison
CP156949.1 See Comparison
NZ_OZ038592.1 See Comparison
NZ_OZ040493.1 See Comparison
NZ_CP122937.1 See Comparison
NZ_OP242316.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_AP027656.1 See Comparison
NZ_AP027787.1 See Comparison
NZ_AP027853.1 See Comparison
NZ_LC438465.1 See Comparison
NZ_CP047581.1 See Comparison
CP066199.1 See Comparison
NZ_CP057102.1 See Comparison
CP057858.1 See Comparison
NZ_CP055679.1 See Comparison
NZ_CP055604.1 See Comparison
CP057847.1 See Comparison
CP057624.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP070126.1 See Comparison
NZ_CP062911.1 See Comparison
NZ_AP022165.1 See Comparison
CP099229.1 See Comparison
CP099235.1 See Comparison
CP099241.1 See Comparison
NZ_CP119752.1 See Comparison
NZ_CP104597.1 See Comparison
NZ_CP103335.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore