Plasmid NZ_CP016519.1

Sequence

Nucleotide Information

Accession	NZ_CP016519.1
Description	Salmonella enterica subsp. enterica serovar Heidelberg strain CE-R2-11-0435 plasmid pCE-R2-11-0435_6, complete sequence
Source	refseq
Topology	circular
Length	6647 bp
GC Content	0.49 %
Created at NCBI	July 22, 2016

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (611)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Assembly

Genome Data Information

Accession	GCF_001690075.1
Assembly Coverage	66

Biosample

Curated Collection Information

Accession	5263538

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Canada,Ontario
Original Query Type	name
Coordinates (Lat/Lon)	50.00/-86.00
Address	Canada,Ontario

ECOSYSTEM

Original Query	Chicken Meat
Classification	food,meat
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP077348.1	See Comparison
CP077288.1	See Comparison
NZ_CP019025.1	See Comparison
NZ_CP018943.1	See Comparison
NZ_CP010175.1	See Comparison
NZ_CP016584.1	See Comparison
NZ_CP016513.1	See Comparison
NZ_CP041097.1	See Comparison
OY856305.1	See Comparison
OY856298.1	See Comparison
NZ_CP115373.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_CP124432.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_CP122632.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_CP070126.1	See Comparison
NZ_CP141848.1	See Comparison
NZ_CP055679.1	See Comparison
NZ_CP055604.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_AP027787.1	See Comparison
CP057624.1	See Comparison
CP057414.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP062911.1	See Comparison
CP066199.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_CP104543.1	See Comparison
NZ_CP119752.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP103335.1	See Comparison
NZ_CP116092.1	See Comparison
NZ_CP080060.1	See Comparison
NZ_CP074037.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_CP099724.1	See Comparison
NZ_OW968279.1	See Comparison
NZ_CP101204.1	See Comparison
OW849254.1	See Comparison
OW849392.1	See Comparison
NZ_CP086497.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP055117.1	See Comparison
NZ_CP091536.1	See Comparison
NZ_MN868651.1	See Comparison
NZ_CP010175.1	See Comparison
CP090271.1	See Comparison
NZ_CP087577.1	See Comparison
CP077348.1	See Comparison
CP077288.1	See Comparison
NZ_CP019025.1	See Comparison
NZ_CP018943.1	See Comparison
CP088359.1	See Comparison
NZ_AP024129.1	See Comparison
NZ_CP041097.1	See Comparison
NZ_CP016519.1	See Comparison
NZ_CP016513.1	See Comparison
NZ_CP016584.1	See Comparison
OY856305.1	See Comparison
OY856298.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP115373.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_CP124432.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_CP122632.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_CP101204.1	See Comparison
NZ_CP141848.1	See Comparison
NZ_CP055679.1	See Comparison
NZ_CP055604.1	See Comparison
CP057624.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP070126.1	See Comparison
CP066199.1	See Comparison
NZ_CP119752.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP103335.1	See Comparison
NZ_CP116092.1	See Comparison
NZ_CP074037.1	See Comparison
NZ_CP074023.1	See Comparison
CP057414.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP062911.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_CP104543.1	See Comparison
NZ_CP080060.1	See Comparison
NZ_CP099724.1	See Comparison
NZ_OW968279.1	See Comparison
NZ_CP086477.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
OW849392.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP055117.1	See Comparison
NZ_CP091536.1	See Comparison
CP090271.1	See Comparison
NZ_MN868651.1	See Comparison
CP088359.1	See Comparison
NZ_CP010175.1	See Comparison
NZ_CP087577.1	See Comparison
NZ_CP019025.1	See Comparison
NZ_CP018943.1	See Comparison
NZ_AP024129.1	See Comparison
CP077348.1	See Comparison
CP077288.1	See Comparison
NZ_CP016584.1	See Comparison
NZ_CP115373.1	See Comparison
NZ_CP016513.1	See Comparison
NZ_CP041097.1	See Comparison
OY856305.1	See Comparison
OY856298.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_CP122632.1	See Comparison
NZ_CP124432.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_CP070126.1	See Comparison
NZ_CP141848.1	See Comparison
NZ_CP055679.1	See Comparison
NZ_CP055604.1	See Comparison
CP057624.1	See Comparison
CP057414.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP062911.1	See Comparison
CP066199.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP119752.1	See Comparison
NZ_CP103335.1	See Comparison
NZ_CP116092.1	See Comparison
NZ_CP074037.1	See Comparison
NZ_CP104543.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_OW968279.1	See Comparison
NZ_CP101204.1	See Comparison
NZ_CP099724.1	See Comparison
OW849287.1	See Comparison
NZ_CP080060.1	See Comparison
OW849392.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP087577.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP055117.1	See Comparison
NZ_CP091536.1	See Comparison
CP090271.1	See Comparison
NZ_MN868651.1	See Comparison
NZ_CP019025.1	See Comparison
CP088359.1	See Comparison
NZ_AP024129.1	See Comparison
CP077348.1	See Comparison
CP077288.1	See Comparison
NZ_CP018943.1	See Comparison
NZ_CP010175.1	See Comparison
OY856305.1	See Comparison
NZ_CP016584.1	See Comparison
NZ_CP016513.1	See Comparison
NZ_CP041097.1	See Comparison
OY856298.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_CP115373.1	See Comparison
NZ_CP122632.1	See Comparison
NZ_CP124432.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_CP141848.1	See Comparison
NZ_CP119752.1	See Comparison
NZ_CP055679.1	See Comparison
NZ_CP055604.1	See Comparison
CP057624.1	See Comparison
CP057414.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP070126.1	See Comparison
CP066199.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP062911.1	See Comparison
NZ_CP103335.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP074037.1	See Comparison
NZ_CP116092.1	See Comparison
NZ_CP104543.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_CP101204.1	See Comparison
NZ_CP099724.1	See Comparison
NZ_OW968279.1	See Comparison
NZ_CP080060.1	See Comparison
OW849392.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP087577.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP055117.1	See Comparison
NZ_CP091536.1	See Comparison
CP090271.1	See Comparison
NZ_MN868651.1	See Comparison
CP088359.1	See Comparison
NZ_AP024129.1	See Comparison
CP077288.1	See Comparison
NZ_CP016584.1	See Comparison
CP077348.1	See Comparison
NZ_CP010175.1	See Comparison
NZ_CP019025.1	See Comparison
NZ_CP018943.1	See Comparison
NZ_CP016513.1	See Comparison
NZ_CP041097.1	See Comparison
NZ_CP115373.1	See Comparison
OY856305.1	See Comparison
OY856298.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_CP122632.1	See Comparison
NZ_CP124432.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_CP141848.1	See Comparison
NZ_CP055679.1	See Comparison
NZ_CP055604.1	See Comparison
CP057624.1	See Comparison
CP057414.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_CP062911.1	See Comparison
NZ_CP070126.1	See Comparison
CP066199.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_CP119752.1	See Comparison
NZ_CP103335.1	See Comparison
NZ_CP116092.1	See Comparison
OW849287.1	See Comparison
NZ_CP074037.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_CP101204.1	See Comparison
NZ_CP080060.1	See Comparison
OW849392.1	See Comparison
NZ_CP104543.1	See Comparison
NZ_CP099724.1	See Comparison
NZ_OW968279.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP016513.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP055117.1	See Comparison
NZ_CP091536.1	See Comparison
CP090271.1	See Comparison
NZ_MN868651.1	See Comparison
CP088359.1	See Comparison
CP077348.1	See Comparison
CP077288.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP087577.1	See Comparison
NZ_AP024129.1	See Comparison
NZ_CP019025.1	See Comparison
NZ_CP018943.1	See Comparison
NZ_CP010175.1	See Comparison
OY856305.1	See Comparison
NZ_CP041097.1	See Comparison
NZ_CP016584.1	See Comparison
OY856298.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_CP115373.1	See Comparison
NZ_CP124432.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP131912.1	See Comparison
NZ_CP122632.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_OZ038592.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_CP122937.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_AP027656.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_AP027853.1	See Comparison
NZ_CP141848.1	See Comparison
NZ_CP055679.1	See Comparison
NZ_CP055604.1	See Comparison
CP057624.1	See Comparison
CP057414.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP062911.1	See Comparison
NZ_CP070126.1	See Comparison
CP066199.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_CP104543.1	See Comparison
NZ_OP242316.1	See Comparison
NZ_CP116092.1	See Comparison
NZ_CP119752.1	See Comparison
NZ_CP103335.1	See Comparison
NZ_CP099724.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_CP101204.1	See Comparison
NZ_CP074037.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_OW968279.1	See Comparison
OW849392.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP080060.1	See Comparison
OW849287.1	See Comparison
NZ_CP097202.1	See Comparison
NZ_CP086517.1	See Comparison
CP088359.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_MN868651.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP055117.1	See Comparison
NZ_CP091536.1	See Comparison
CP090271.1	See Comparison
NZ_CP087577.1	See Comparison
NZ_AP024129.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore