Plasmid NZ_CP012628.1

Sequence

Nucleotide Information

Accession NZ_CP012628.1
Description Escherichia coli strain SF-468 plasmid pSF-468-3, complete sequence
Source refseq
Topology circular
Length 6647 bp
GC Content 0.49 %
Created at NCBI Jan. 27, 2016



Assembly

Genome Data Information

Accession GCF_001280345.1
Assembly Coverage 90


Biosample

Curated Collection Information
Accession 4026228

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.755651N;122.404572W
Original Query Type coordinates
Coordinates (Lat/Lon) 37.76/-122.40
Address San Francisco General Hospital, 1001, Potrero Avenue, Mission District, San Francisco, California, 94158, United States

ECOSYSTEM
Original Query Homo sapiens,patient blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP104597.1 See Comparison
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OW849392.1 See Comparison
AP026517.1 See Comparison
NZ_CP101204.1 See Comparison
OW968068.1 See Comparison
NZ_CP080060.1 See Comparison
NZ_CP018943.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
OW849254.1 See Comparison
NZ_CP086507.1 See Comparison
NZ_CP086517.1 See Comparison
NZ_CP086477.1 See Comparison
NZ_CP086487.1 See Comparison
NZ_CP086497.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_CP032082.1 See Comparison
NZ_CP032070.1 See Comparison
NZ_CP016584.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP016513.1 See Comparison
NZ_CP115373.1 See Comparison
NZ_CP122937.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP122628.1 See Comparison
NZ_CP124432.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP131912.1 See Comparison
NZ_CP149310.1 See Comparison
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NZ_CP055679.1 See Comparison
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NZ_CP047581.1 See Comparison
NZ_CP070126.1 See Comparison
NZ_LT985237.1 See Comparison
CP099229.1 See Comparison
NZ_AP022165.1 See Comparison
NZ_CP057102.1 See Comparison
CP099235.1 See Comparison
CP099241.1 See Comparison
AP026517.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP104597.1 See Comparison
NZ_CP074023.1 See Comparison
OW849287.1 See Comparison
NZ_CP101204.1 See Comparison
OW968068.1 See Comparison
NZ_CP080060.1 See Comparison
OW849254.1 See Comparison
OW849392.1 See Comparison
OW849281.1 See Comparison
NZ_CP086477.1 See Comparison
NZ_CP086507.1 See Comparison
NZ_CP086517.1 See Comparison
NZ_CP086487.1 See Comparison
NZ_CP086497.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_CP032082.1 See Comparison
NZ_CP032070.1 See Comparison
NZ_CP115373.1 See Comparison
NZ_CP016584.1 See Comparison
NZ_CP016513.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP018943.1 See Comparison
NZ_CP124432.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP131912.1 See Comparison
NZ_CP122937.1 See Comparison
NZ_CP122628.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_AP027787.1 See Comparison
NZ_AP027853.1 See Comparison
CP057858.1 See Comparison
NZ_CP055679.1 See Comparison
CP057847.1 See Comparison
NZ_CP070126.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_AP022165.1 See Comparison
NZ_CP057102.1 See Comparison
OW849392.1 See Comparison
CP099229.1 See Comparison
CP099235.1 See Comparison
CP099241.1 See Comparison
NZ_CP074023.1 See Comparison
AP026517.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP104597.1 See Comparison
NZ_CP101204.1 See Comparison
OW968068.1 See Comparison
NZ_CP080060.1 See Comparison
NZ_CP018943.1 See Comparison
OW849254.1 See Comparison
NZ_CP086477.1 See Comparison
NZ_CP086487.1 See Comparison
NZ_CP086497.1 See Comparison
NZ_CP086507.1 See Comparison
NZ_CP086517.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_CP032082.1 See Comparison
NZ_CP032070.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
NZ_CP124432.1 See Comparison
NZ_CP016584.1 See Comparison
NZ_CP016513.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP115373.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP131912.1 See Comparison
NZ_CP122937.1 See Comparison
NZ_CP122628.1 See Comparison
NZ_AP027787.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_AP027853.1 See Comparison
NZ_LT985237.1 See Comparison
CP057858.1 See Comparison
NZ_CP055679.1 See Comparison
CP057847.1 See Comparison
NZ_CP047581.1 See Comparison
CP099229.1 See Comparison
NZ_CP057102.1 See Comparison
NZ_CP070126.1 See Comparison
NZ_AP022165.1 See Comparison
CP099235.1 See Comparison
CP099241.1 See Comparison
NZ_CP080060.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP104597.1 See Comparison
NZ_CP101204.1 See Comparison
NZ_CP074023.1 See Comparison
AP026517.1 See Comparison
OW968068.1 See Comparison
OW849254.1 See Comparison
OW849392.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP018943.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP124432.1 See Comparison
NZ_CP122937.1 See Comparison
NZ_CP122628.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
NZ_CP086477.1 See Comparison
NZ_CP086487.1 See Comparison
NZ_CP086497.1 See Comparison
NZ_CP086507.1 See Comparison
NZ_CP086517.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_CP032082.1 See Comparison
NZ_CP032070.1 See Comparison
NZ_CP016584.1 See Comparison
NZ_CP016513.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP115373.1 See Comparison
NZ_CP131912.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_AP027853.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_AP027787.1 See Comparison
CP057858.1 See Comparison
NZ_CP055679.1 See Comparison
CP057847.1 See Comparison
CP099229.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_AP022165.1 See Comparison
NZ_CP070126.1 See Comparison
NZ_CP057102.1 See Comparison
CP099235.1 See Comparison
CP099241.1 See Comparison
NZ_CP101204.1 See Comparison
NZ_CP104597.1 See Comparison
NZ_CP074023.1 See Comparison
AP026517.1 See Comparison
NZ_CP103335.1 See Comparison
OW968068.1 See Comparison
OW849287.1 See Comparison
NZ_CP080060.1 See Comparison
OW849254.1 See Comparison
OW849392.1 See Comparison
OW849281.1 See Comparison
NZ_CP086477.1 See Comparison
NZ_CP086497.1 See Comparison
NZ_CP086507.1 See Comparison
NZ_CP086517.1 See Comparison
NZ_CP086487.1 See Comparison
NZ_CP016584.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_CP018943.1 See Comparison
NZ_CP012628.1 See Comparison
NZ_CP032082.1 See Comparison
NZ_CP032070.1 See Comparison
NZ_CP016513.1 See Comparison
NZ_CP115373.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP124432.1 See Comparison
NZ_CP131912.1 See Comparison
NZ_CP122937.1 See Comparison
NZ_CP122628.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_AP027787.1 See Comparison
NZ_AP027853.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP047581.1 See Comparison
CP057858.1 See Comparison
NZ_CP055679.1 See Comparison
CP057847.1 See Comparison
CP099229.1 See Comparison
NZ_CP070126.1 See Comparison
NZ_AP022165.1 See Comparison
NZ_CP057102.1 See Comparison
CP099235.1 See Comparison
CP099241.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP104597.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore