Plasmid CP099235.1

Sequence

Nucleotide Information

Accession	CP099235.1
Description	Escherichia coli strain RHB13-SO-C02 plasmid unnamed4, complete sequence
Source	insd
Topology	circular
Length	6668 bp
GC Content	0.49 %
Created at NCBI	April 13, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCA_029717325.1
Assembly Coverage	109

Biosample

Curated Collection Information

Accession	15488538

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	United Kingdom
Original Query Type	name
Coordinates (Lat/Lon)	54.70/-3.28
Address	United Kingdom

ECOSYSTEM

Original Query	culture,Pooled soil sample collected from floor of pig farm
Classification	anthropogenic,cell_culture,farm,soil
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_AP022165.1	See Comparison
CP099229.1	See Comparison
CP099235.1	See Comparison
CP099241.1	See Comparison
NZ_CP104597.1	See Comparison
AP026517.1	See Comparison
OW968068.1	See Comparison
OW849392.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP054981.1	See Comparison
CP057858.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_CP032082.1	See Comparison
NZ_CP032070.1	See Comparison
NZ_CP012628.1	See Comparison
CP057847.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP012628.1	See Comparison
NZ_AP022165.1	See Comparison
NZ_CP104597.1	See Comparison
AP026517.1	See Comparison
OW968068.1	See Comparison
OW849392.1	See Comparison
CP099229.1	See Comparison
CP099241.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP032082.1	See Comparison
NZ_CP032070.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_CP047581.1	See Comparison
CP057858.1	See Comparison
CP057847.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_AP022165.1	See Comparison
CP099229.1	See Comparison
CP099241.1	See Comparison
OW849392.1	See Comparison
NZ_CP104597.1	See Comparison
AP026517.1	See Comparison
OW968068.1	See Comparison
NZ_CP012628.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP032082.1	See Comparison
NZ_CP032070.1	See Comparison
NZ_CP122628.1	See Comparison
AP026517.1	See Comparison
CP057858.1	See Comparison
CP057847.1	See Comparison
NZ_AP022165.1	See Comparison
CP099229.1	See Comparison
CP099241.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP104597.1	See Comparison
NZ_CP086477.1	See Comparison
OW849392.1	See Comparison
OW968068.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_CP012628.1	See Comparison
NZ_CP032082.1	See Comparison
NZ_CP032070.1	See Comparison
NZ_CP122628.1	See Comparison
OW968068.1	See Comparison
CP057858.1	See Comparison
CP057847.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP104597.1	See Comparison
NZ_AP022165.1	See Comparison
CP099229.1	See Comparison
CP099241.1	See Comparison
AP026517.1	See Comparison
OW849287.1	See Comparison
OW849392.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
CP057858.1	See Comparison
NZ_CP012628.1	See Comparison
NZ_AP027787.1	See Comparison
NZ_CP086477.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP032082.1	See Comparison
NZ_CP032070.1	See Comparison
NZ_CP122628.1	See Comparison
CP057847.1	See Comparison
AP026517.1	See Comparison
NZ_CP047581.1	See Comparison
CP099229.1	See Comparison
CP099241.1	See Comparison
NZ_CP104597.1	See Comparison
NZ_AP022165.1	See Comparison
NZ_CP086477.1	See Comparison
OW849392.1	See Comparison
OW968068.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP086497.1	See Comparison
NZ_CP086507.1	See Comparison
NZ_CP086517.1	See Comparison
NZ_CP086487.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP032082.1	See Comparison
NZ_CP032070.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP122628.1	See Comparison
NZ_CP012628.1	See Comparison
NZ_AP027787.1	See Comparison
CP057858.1	See Comparison
CP057847.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore