Plasmid NZ_CP087292.1

Sequence

Nucleotide Information

Accession NZ_CP087292.1
Description Escherichia coli strain APEC 102026 plasmid p102026_2, complete sequence
Source refseq
Topology circular
Length 6584 bp
GC Content 0.48 %
Created at NCBI Feb. 23, 2023



Assembly

Genome Data Information

Accession GCF_028752695.1
Assembly Coverage 55


Biosample

Curated Collection Information
Accession 23175190

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.8136S;144.9631E
Original Query Type coordinates
Coordinates (Lat/Lon) -37.81/144.96
Address 260, Elizabeth Street, East End Theatre District, Melbourne, City of Melbourne, Victoria, 3000, Australia

ECOSYSTEM
Original Query chicken,Tissue
Classification host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query avian colibacillosis
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP087577.1 See Comparison
NZ_CP053653.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP122912.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_OZ040493.1 See Comparison
NZ_CP141848.1 See Comparison
NZ_CP055679.1 See Comparison
CP057414.1 See Comparison
NZ_LC438465.1 See Comparison
CP066199.1 See Comparison
OW849392.1 See Comparison
NZ_CP104543.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_OW968279.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP087577.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
OW849254.1 See Comparison
NZ_CP053653.1 See Comparison
NZ_CP122912.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_OZ040493.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP141848.1 See Comparison
NZ_CP055679.1 See Comparison
CP057414.1 See Comparison
NZ_LC438465.1 See Comparison
CP066199.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_CP104543.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_OW968279.1 See Comparison
NZ_CP074037.1 See Comparison
OW849254.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
OW849392.1 See Comparison
NZ_CP122912.1 See Comparison
NZ_CP087577.1 See Comparison
NZ_CP053653.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_OZ040493.1 See Comparison
CP066199.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP141848.1 See Comparison
NZ_CP055679.1 See Comparison
CP057414.1 See Comparison
NZ_LC438465.1 See Comparison
NZ_OW968279.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_CP104543.1 See Comparison
OW849254.1 See Comparison
OW849392.1 See Comparison
NZ_CP087577.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP053653.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP122912.1 See Comparison
NZ_OZ040493.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP116092.1 See Comparison
CP066199.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP141848.1 See Comparison
NZ_CP055679.1 See Comparison
CP057414.1 See Comparison
NZ_LC438465.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP104543.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_OW968279.1 See Comparison
OW849392.1 See Comparison
NZ_CP019025.1 See Comparison
OW849254.1 See Comparison
NZ_CP087577.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
NZ_CP053653.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP141848.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_OZ040493.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP122912.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP055679.1 See Comparison
CP057414.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_LC438465.1 See Comparison
CP066199.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_CP087292.1 See Comparison
NZ_CP104543.1 See Comparison
NZ_CP074023.1 See Comparison
OW849392.1 See Comparison
NZ_OW968279.1 See Comparison
NZ_CP019025.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
NZ_CP053653.1 See Comparison
OW849254.1 See Comparison
NZ_CP087577.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_CP141848.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP122912.1 See Comparison
NZ_OZ040493.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP055679.1 See Comparison
CP057414.1 See Comparison
NZ_LC438465.1 See Comparison
NZ_CP103335.1 See Comparison
CP066199.1 See Comparison
NZ_OW968279.1 See Comparison
NZ_CP104543.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP074023.1 See Comparison
OW849392.1 See Comparison
OW849254.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore