Plasmid CP063733.1

Sequence

Nucleotide Information

Accession	CP063733.1
Description	Escherichia coli strain 18SC05VL02-EC plasmid pVPS18EC0505-4, complete sequence
Source	insd
Topology	circular
Length	6647 bp
GC Content	0.49 %
Created at NCBI	Nov. 5, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCA_015242275.1
Assembly Coverage	685

Biosample

Curated Collection Information

Accession	16533951

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	USA,SC
Original Query Type	name
Coordinates (Lat/Lon)	33.69/-80.44
Address	USA,SC

ECOSYSTEM

Original Query	Veal
Classification	food
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

OW849392.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP091536.1	See Comparison
NZ_CP087577.1	See Comparison
NZ_CP019025.1	See Comparison
NZ_CP010175.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_CP141848.1	See Comparison
CP057414.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_LT985237.1	See Comparison
CP066199.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_CP116092.1	See Comparison
NZ_CP104543.1	See Comparison
NZ_OW968279.1	See Comparison
NZ_CP074037.1	See Comparison
OW849392.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP010175.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP091536.1	See Comparison
NZ_CP087577.1	See Comparison
NZ_CP019025.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_CP141848.1	See Comparison
CP057414.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP104543.1	See Comparison
CP066199.1	See Comparison
NZ_CP116092.1	See Comparison
NZ_CP057102.1	See Comparison
OW849254.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_OW968279.1	See Comparison
OW849392.1	See Comparison
NZ_CP074037.1	See Comparison
NZ_CP087577.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP091536.1	See Comparison
NZ_CP019025.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP010175.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_CP141848.1	See Comparison
CP066199.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_LT985237.1	See Comparison
CP057414.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_CP116092.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_CP104543.1	See Comparison
NZ_CP074037.1	See Comparison
NZ_CP074023.1	See Comparison
OW849254.1	See Comparison
NZ_OW968279.1	See Comparison
OW849392.1	See Comparison
NZ_CP087577.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP091536.1	See Comparison
NZ_CP019025.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP010175.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_CP141848.1	See Comparison
CP057414.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP047581.1	See Comparison
OW849392.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_CP104543.1	See Comparison
CP066199.1	See Comparison
NZ_CP116092.1	See Comparison
NZ_CP074037.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_OW968279.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
OW849254.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP091536.1	See Comparison
NZ_CP087577.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_CP019025.1	See Comparison
NZ_CP010175.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_CP149315.1	See Comparison
NZ_CP149310.1	See Comparison
CP057414.1	See Comparison
NZ_CP141848.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_CP047581.1	See Comparison
CP063733.1	See Comparison
NZ_LT985237.1	See Comparison
CP066199.1	See Comparison
NZ_CP057102.1	See Comparison
OW849392.1	See Comparison
NZ_CP116092.1	See Comparison
NZ_CP104543.1	See Comparison
NZ_CP074037.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_OW968279.1	See Comparison
NZ_CP010175.1	See Comparison
OW849287.1	See Comparison
OW849281.1	See Comparison
NZ_CP087577.1	See Comparison
OW849254.1	See Comparison
NZ_CP054981.1	See Comparison
NZ_CP091536.1	See Comparison
NZ_CP019025.1	See Comparison
NZ_CP122912.1	See Comparison
NZ_CP127253.1	See Comparison
NZ_CP127307.1	See Comparison
NZ_OZ040493.1	See Comparison
NZ_CP149310.1	See Comparison
NZ_CP141848.1	See Comparison
CP066199.1	See Comparison
NZ_CP149315.1	See Comparison
CP057414.1	See Comparison
NZ_LC438465.1	See Comparison
NZ_CP047581.1	See Comparison
NZ_LT985237.1	See Comparison
NZ_CP057102.1	See Comparison
NZ_CP116092.1	See Comparison
NZ_CP104543.1	See Comparison
NZ_CP074037.1	See Comparison
NZ_CP074023.1	See Comparison
NZ_OW968279.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore