Plasmid NZ_CP104310.1

Sequence

Nucleotide Information

Accession NZ_CP104310.1
Description Escherichia coli O157:H7 strain 380-94 plasmid p380-94, complete sequence
Source refseq
Topology circular
Length 92704 bp
GC Content 0.48 %
Created at NCBI Sept. 20, 2022



Assembly

Genome Data Information

Accession GCF_025252445.1
Assembly Coverage 109


Biosample

Curated Collection Information

Accession 30166759

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,bacteria,clinical isolate
Classification host_associated,material,organic
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization




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based on Mash distance

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NZ_CP133129.1 See Comparison
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NZ_CP149467.1 See Comparison
NZ_CP143965.1 See Comparison
NZ_CP140517.1 See Comparison
NZ_CP111104.1 See Comparison
NZ_CP038343.1 See Comparison
NZ_CP038410.1 See Comparison
NZ_CP038373.1 See Comparison
NZ_CP038359.1 See Comparison
NZ_CP038429.1 See Comparison
NZ_CP038364.1 See Comparison
NZ_CP038406.1 See Comparison
NZ_CP038314.1 See Comparison
NZ_CP038352.1 See Comparison
NZ_CP038327.1 See Comparison
NZ_CP038350.1 See Comparison
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NZ_CP038495.1 See Comparison
NZ_CP038497.1 See Comparison
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Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore