Plasmid NZ_CP017252.1
Sequence
Nucleotide Information
| Accession | NZ_CP017252.1 |
|---|---|
| Description | Escherichia coli strain NADC 5570/86-24/6564 isolate wild type plasmid pO157, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 92691 bp |
| GC Content | 0.48 % |
| Created at NCBI | Oct. 26, 2016 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 5729956 |
|---|
PLASMID INFORMATION
| Genotype | stx2+, eae+, Str-resistant |
|---|---|
| BIOSAMPLE_pathotype | EHEC |
GEOGRAPHICAL INFORMATION
| Original Query | None |
|---|---|
| Original Query Type | None |
| Coordinates (Lat/Lon) | |
| Address | None |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | espP | copy | ||
| amrfinderplus | ehxA | copy | ||
| amrfinderplus | katP | copy | ||
| amrfinderplus | toxB | copy | ||
| PGAG | RepB family plasmid replication initiator protein | copy | ||
| PGAG | tyrosine-type recombinase/integrase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | MarR family transcriptional regulator | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | ehxD | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 83 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000096__NC_019117_00097 | IncFIB | 1 | 832 | plus | 97.957 | 99 | 0 | 1443 |
| replicon | 000136__AP014877_00014 | IncFIA | 45484 | 46341 | minus | 96.27 | 100 | 0 | 1408 |
| replicon | AY458016 | IncFIC | 46339 | 46597 | plus | 96.169 | 100 | 1.08e-116 | 425 |
| replicon | AP001918 | IncFIB | 92467 | 92691 | plus | 99.556 | 100 | 8.52e-112 | 411 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |