PLSDB
v. 2024_05_31_v2
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Typing
Plasmid CP051826.1
Sequence
Nucleotide Information
Accession
CP051826.1
Description
Escherichia coli O157:H7 strain FLT_2000A plasmid pFLT_2000A-1, complete sequence
Source
insd
Topology
circular
Length
92703 bp
GC Content
0.48 %
Created at NCBI
Feb. 8, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (83334)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCA_016835055.1
Assembly Coverage
264
Biosample
Curated Collection Information
Accession
14648854
PLASMID INFORMATION
BIOSAMPLE_pathotype
STEC
GEOGRAPHICAL INFORMATION
Original Query
40.524829N;98.140806W
Original Query Type
coordinates
Coordinates (Lat/Lon)
40.52/-98.14
Address
Roman L. Hruska U.S. Meat Animal Research Center, 844, Road 313, Clay Center, Clay County, Nebraska, 68933, United States
ECOSYSTEM
Original Query
cattle,feces
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Bos taurus (
9913
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
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Plasmids from same Biosample
CP051825.1
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based on Mash distance
NZ_CP038410.1
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NC_019041.1
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NZ_CP017250.1
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NZ_CP017441.1
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NZ_CP032806.1
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NZ_CP044144.1
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NZ_CP028699.1
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AB011549.2
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NZ_CP101523.1
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NZ_CP133132.1
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NZ_CP133121.1
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NZ_CP133125.1
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CP133123.1
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NZ_CP028697.1
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NZ_CP017445.1
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NZ_CP017441.1
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NZ_CP008958.1
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NZ_CP018248.1
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NZ_CP028689.1
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NZ_CP028686.1
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NZ_CP044146.1
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NZ_CP012803.1
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NZ_CP028701.1
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NZ_CP028684.1
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NZ_CP028653.1
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NZ_CP034805.1
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NZ_CP028612.1
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NZ_CP034807.1
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NC_002128.1
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AB011549.2
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NZ_CP101523.1
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NZ_CP133132.1
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NZ_CP133121.1
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NZ_CP133129.1
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NZ_CP133125.1
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CP133123.1
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NZ_CP140517.1
See Comparison
CP126905.1
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NZ_CP149467.1
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NZ_CP148320.1
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NZ_CP145943.1
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NZ_CP143967.1
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NZ_CP143969.1
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NZ_CP132296.1
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NZ_CP132299.1
See Comparison
NZ_CP124743.1
See Comparison
NZ_CP143965.1
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NZ_CP111097.1
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NZ_AP018692.1
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NZ_CP038410.1
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NZ_CP038373.1
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NZ_CP038359.1
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NZ_CP038429.1
See Comparison
NZ_CP038406.1
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NZ_CP038314.1
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NZ_CP111104.1
See Comparison
NZ_CP038343.1
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NZ_CP038327.1
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NZ_CP038364.1
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NZ_CP038352.1
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NZ_CP038350.1
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NZ_CP038323.1
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NZ_CP034385.1
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NZ_CP038497.1
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NZ_CP038495.1
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CP041748.1
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CP051835.1
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NZ_CP062701.1
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CP051832.1
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CP051829.1
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CP051805.1
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NZ_CP104640.1
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NZ_CP064169.1
See Comparison
NZ_CP062161.1
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NZ_CP120945.1
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NZ_CP066760.1
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NZ_CP066757.1
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CP090859.1
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NZ_CP103865.1
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NZ_CP104310.1
See Comparison
NZ_CP064384.1
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CP090861.1
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NZ_CP089271.1
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NZ_CP089033.1
See Comparison
NZ_CP089035.1
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NZ_CP028608.1
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NZ_CP015022.1
See Comparison
NZ_CP012803.1
See Comparison
NZ_CP008958.1
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NC_019041.1
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NC_017907.1
See Comparison
NZ_CP032806.1
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NZ_CP032798.1
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NZ_CP044144.1
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NZ_CP044139.1
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NZ_CP044146.1
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NZ_CP040571.1
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NZ_CP018248.1
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NZ_CP017670.1
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NZ_CP017252.1
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NZ_CP017250.1
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NZ_CP017445.1
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NZ_CP017441.1
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NZ_CP028684.1
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NZ_CP028697.1
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NZ_CP028653.1
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NZ_CP028699.1
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NZ_CP028694.1
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NZ_CP028651.1
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NZ_CP028689.1
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NZ_CP028655.1
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NZ_CP028686.1
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NZ_CP028692.1
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NZ_CP028701.1
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NZ_CP028612.1
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NZ_CP031914.1
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NZ_CP022688.1
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NZ_CP034805.1
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NZ_CP034807.1
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NZ_CP018626.1
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NZ_CP136756.1
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NC_002128.1
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AB011549.2
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CP126905.1
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NZ_CP101523.1
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NZ_CP133127.1
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NZ_CP133132.1
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NZ_CP133121.1
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NZ_CP133129.1
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NZ_CP133125.1
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CP133123.1
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NZ_CP132296.1
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NZ_CP132299.1
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NZ_CP148320.1
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NZ_CP149467.1
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NZ_CP124743.1
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NZ_CP143967.1
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NZ_CP143969.1
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NZ_CP143965.1
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NZ_CP145943.1
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NZ_CP111097.1
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NZ_CP140517.1
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NZ_CP111104.1
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Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore