Plasmid CP051826.1

Sequence

Nucleotide Information

Accession CP051826.1
Description Escherichia coli O157:H7 strain FLT_2000A plasmid pFLT_2000A-1, complete sequence
Source insd
Topology circular
Length 92703 bp
GC Content 0.48 %
Created at NCBI Feb. 8, 2021



Assembly

Genome Data Information

Accession GCA_016835055.1
Assembly Coverage 264


Biosample

Curated Collection Information

Accession 14648854

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query 40.524829N;98.140806W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.52/-98.14
Address Roman L. Hruska U.S. Meat Animal Research Center, 844, Road 313, Clay Center, Clay County, Nebraska, 68933, United States

ECOSYSTEM
Original Query cattle,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization


Plasmids from same Biosample



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based on Mash distance

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NZ_CP028686.1 See Comparison
NZ_CP028692.1 See Comparison
NZ_CP028701.1 See Comparison
NZ_CP028612.1 See Comparison
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NZ_CP022688.1 See Comparison
NZ_CP034805.1 See Comparison
NZ_CP034807.1 See Comparison
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NZ_CP133127.1 See Comparison
NZ_CP133132.1 See Comparison
NZ_CP133121.1 See Comparison
NZ_CP133129.1 See Comparison
NZ_CP133125.1 See Comparison
CP133123.1 See Comparison
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NZ_CP132299.1 See Comparison
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NZ_CP149467.1 See Comparison
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NZ_CP143967.1 See Comparison
NZ_CP143969.1 See Comparison
NZ_CP143965.1 See Comparison
NZ_CP145943.1 See Comparison
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NZ_CP111104.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore