Plasmid NZ_CP064169.1
Sequence
Nucleotide Information
Accession | NZ_CP064169.1 |
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Description | Escherichia coli O157:H7 strain Wll001 plasmid unnamed2 |
Source | refseq |
Topology | linear |
Length | 95164 bp |
GC Content | 0.48 % |
Created at NCBI | Nov. 11, 2020 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Escherichia coli (83334) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Escherichia (561) |
Species | Escherichia_coli (562) |
Strain |
Biosample
Curated Collection Information
Accession | 16409547 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | China,Wuhan |
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Original Query Type | name |
Coordinates (Lat/Lon) | 30.59/114.30 |
Address | China,Wuhan |
ECOSYSTEM
Original Query | Homo sapiens,cell culture |
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Classification | cell_culture,host_associated |
Host-associated Taxon |
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DISEASE
Original Query | None |
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DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
amrfinderplus | toxB | copy | ||
amrfinderplus | ehxA | copy | ||
amrfinderplus | espP | copy | ||
amrfinderplus | katP | copy | ||
PGAG | gspL | copy | ||
PGAG | type II secretion system protein GspL | copy | ||
PGAG | gspL | copy | ||
PGAG | gspK | copy | ||
PGAG | gspJ | copy | ||
PGAG | gspI | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 84 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
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NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | 000136__AP014877_00014 | IncFIA | 33023 | 33880 | minus | 96.27 | 100 | 0 | 1408 |
replicon | AY458016 | IncFIC | 33878 | 34136 | plus | 96.169 | 100 | 1.08e-116 | 425 |
replicon | 000095__NZ_CP014273_00094 | IncFIB | 81244 | 82221 | plus | 98.057 | 100 | 0 | 1701 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
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NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |