Plasmid NZ_CP014009.1

Sequence

Nucleotide Information

Accession NZ_CP014009.1
Description Klebsiella pneumoniae subsp. pneumoniae strain RJF293 plasmid pRJF293, complete sequence
Source refseq
Topology circular
Length 224263 bp
GC Content 0.50 %
Created at NCBI Jan. 24, 2016



Assembly

Genome Data Information

Accession GCF_001530015.1
Assembly Coverage 195


Biosample

Curated Collection Information
Accession 4377969

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.12N;121.27E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.12/121.27
Address Wenhua Road, Zhaofeijing, Sijing, Songjiang District, Shanghai, 201601, China

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Gastric remnant cancer
DOID/SYMP
  • Stomach cancer (DOID:10534 )
    • A gastrointestinal system cancer that is located_in the stomach.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP096243.1 See Comparison
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NZ_CP027867.1 See Comparison
NZ_CP043581.1 See Comparison
NZ_CP091059.1 See Comparison
NZ_CP091062.1 See Comparison
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CP089869.1 See Comparison
NZ_CP089030.1 See Comparison
NZ_CP037743.1 See Comparison
NZ_CP014011.1 See Comparison
NZ_CP014009.1 See Comparison
NZ_CP034083.1 See Comparison
CP128676.1 See Comparison
NZ_OR388867.1 See Comparison
NZ_OR388870.1 See Comparison
NZ_CP136533.1 See Comparison
NZ_CP122574.1 See Comparison
NZ_CP047678.1 See Comparison
CP052190.1 See Comparison
CP052304.1 See Comparison
CP052204.1 See Comparison
NZ_CP151754.1 See Comparison
NZ_CP151760.1 See Comparison
NZ_CP151757.1 See Comparison
NZ_CP144338.1 See Comparison
NZ_CP144308.1 See Comparison
CP052163.1 See Comparison
CP052144.1 See Comparison
CP052563.1 See Comparison
NZ_CP047676.1 See Comparison
NZ_CP026024.1 See Comparison
NZ_CP027867.1 See Comparison
NZ_CP068686.1 See Comparison
NZ_MT496757.1 See Comparison
NZ_CP096243.1 See Comparison
NZ_CP096235.1 See Comparison
NZ_CP064233.1 See Comparison
NZ_CP064230.1 See Comparison
NZ_CP063891.1 See Comparison
CP046893.1 See Comparison
NZ_CP043581.1 See Comparison
NZ_CP037743.1 See Comparison
NZ_CP091059.1 See Comparison
NZ_CP091062.1 See Comparison
NZ_CP089599.1 See Comparison
CP089869.1 See Comparison
NZ_CP089030.1 See Comparison
NZ_CP014011.1 See Comparison
NZ_CP034083.1 See Comparison
CP128676.1 See Comparison
NZ_OR388867.1 See Comparison
NZ_OR388870.1 See Comparison
NZ_CP136533.1 See Comparison
NZ_CP122574.1 See Comparison
CP052190.1 See Comparison
NZ_CP151754.1 See Comparison
NZ_CP151760.1 See Comparison
NZ_CP151757.1 See Comparison
NZ_CP144338.1 See Comparison
NZ_CP144308.1 See Comparison
CP052163.1 See Comparison
CP052144.1 See Comparison
CP052563.1 See Comparison
CP052304.1 See Comparison
CP052204.1 See Comparison
NZ_CP026024.1 See Comparison
NZ_CP047678.1 See Comparison
NZ_CP047676.1 See Comparison
CP046893.1 See Comparison
NZ_CP064230.1 See Comparison
NZ_CP063891.1 See Comparison
NZ_CP068686.1 See Comparison
NZ_MT496757.1 See Comparison
NZ_CP064233.1 See Comparison
NZ_CP043581.1 See Comparison
NZ_CP096243.1 See Comparison
NZ_CP096235.1 See Comparison
NZ_CP027867.1 See Comparison
NZ_OR388867.1 See Comparison
NZ_CP037743.1 See Comparison
NZ_CP034083.1 See Comparison
NZ_CP091059.1 See Comparison
NZ_CP091062.1 See Comparison
NZ_CP089599.1 See Comparison
CP089869.1 See Comparison
NZ_CP089030.1 See Comparison
NZ_CP014011.1 See Comparison
NZ_OR388870.1 See Comparison
NZ_CP136533.1 See Comparison
CP128676.1 See Comparison
NZ_CP122574.1 See Comparison
CP052163.1 See Comparison
NZ_CP151754.1 See Comparison
NZ_CP151760.1 See Comparison
NZ_CP151757.1 See Comparison
NZ_CP144338.1 See Comparison
NZ_CP144308.1 See Comparison
CP052144.1 See Comparison
CP052563.1 See Comparison
NZ_CP064230.1 See Comparison
CP052190.1 See Comparison
CP052304.1 See Comparison
CP052204.1 See Comparison
NZ_CP026024.1 See Comparison
NZ_CP068686.1 See Comparison
NZ_CP047678.1 See Comparison
NZ_CP047676.1 See Comparison
NZ_MT496757.1 See Comparison
NZ_CP063891.1 See Comparison
CP046893.1 See Comparison
NZ_CP064233.1 See Comparison
NZ_CP096235.1 See Comparison
NZ_CP027867.1 See Comparison
NZ_CP096243.1 See Comparison
NZ_CP014011.1 See Comparison
NZ_CP091059.1 See Comparison
NZ_CP091062.1 See Comparison
NZ_CP089599.1 See Comparison
CP089869.1 See Comparison
NZ_CP089030.1 See Comparison
NZ_CP043581.1 See Comparison
CP128676.1 See Comparison
NZ_CP136533.1 See Comparison
NZ_CP037743.1 See Comparison
NZ_CP034083.1 See Comparison
NZ_OR388867.1 See Comparison
NZ_OR388870.1 See Comparison
NZ_CP122574.1 See Comparison
CP052163.1 See Comparison
CP052144.1 See Comparison
CP052563.1 See Comparison
NZ_CP151754.1 See Comparison
NZ_CP151760.1 See Comparison
NZ_CP151757.1 See Comparison
NZ_CP144338.1 See Comparison
NZ_CP144308.1 See Comparison
NZ_CP047678.1 See Comparison
CP052190.1 See Comparison
CP052304.1 See Comparison
CP052204.1 See Comparison
NZ_CP047676.1 See Comparison
NZ_CP064230.1 See Comparison
NZ_CP026024.1 See Comparison
NZ_MT496757.1 See Comparison
NZ_CP068686.1 See Comparison
NZ_CP063891.1 See Comparison
NZ_CP043581.1 See Comparison
NZ_CP064233.1 See Comparison
CP046893.1 See Comparison
NZ_CP096243.1 See Comparison
NZ_CP096235.1 See Comparison
NZ_CP027867.1 See Comparison
CP128676.1 See Comparison
NZ_CP091059.1 See Comparison
NZ_CP091062.1 See Comparison
NZ_CP089599.1 See Comparison
CP089869.1 See Comparison
NZ_CP089030.1 See Comparison
NZ_CP037743.1 See Comparison
NZ_CP034083.1 See Comparison
NZ_OR388867.1 See Comparison
NZ_OR388870.1 See Comparison
NZ_CP014011.1 See Comparison
NZ_CP136533.1 See Comparison
NZ_CP122574.1 See Comparison
CP052163.1 See Comparison
CP052563.1 See Comparison
NZ_CP151754.1 See Comparison
NZ_CP151760.1 See Comparison
NZ_CP151757.1 See Comparison
NZ_CP144338.1 See Comparison
NZ_CP144308.1 See Comparison
CP052190.1 See Comparison
CP052304.1 See Comparison
CP052204.1 See Comparison
CP052144.1 See Comparison
NZ_CP047678.1 See Comparison
NZ_CP047676.1 See Comparison
NZ_MT496757.1 See Comparison
NZ_CP026024.1 See Comparison
NZ_CP068686.1 See Comparison
NZ_CP064230.1 See Comparison
NZ_CP043581.1 See Comparison
NZ_CP063891.1 See Comparison
NZ_CP027867.1 See Comparison
NZ_CP064233.1 See Comparison
CP046893.1 See Comparison
NZ_CP096243.1 See Comparison
NZ_CP096235.1 See Comparison
NZ_CP037743.1 See Comparison
NZ_CP091059.1 See Comparison
NZ_CP091062.1 See Comparison
NZ_CP014011.1 See Comparison
NZ_CP089599.1 See Comparison
CP089869.1 See Comparison
NZ_CP089030.1 See Comparison
CP128676.1 See Comparison
NZ_CP034083.1 See Comparison
NZ_OR388867.1 See Comparison
NZ_OR388870.1 See Comparison
NZ_CP136533.1 See Comparison
NZ_CP122574.1 See Comparison
CP052190.1 See Comparison
CP052304.1 See Comparison
CP052204.1 See Comparison
NZ_CP151754.1 See Comparison
NZ_CP151760.1 See Comparison
NZ_CP151757.1 See Comparison
NZ_CP144338.1 See Comparison
NZ_CP144308.1 See Comparison
CP052163.1 See Comparison
CP052144.1 See Comparison
CP052563.1 See Comparison
NZ_CP068686.1 See Comparison
NZ_CP047678.1 See Comparison
NZ_CP047676.1 See Comparison
NZ_CP026024.1 See Comparison
CP046893.1 See Comparison
NZ_CP064233.1 See Comparison
NZ_CP063891.1 See Comparison
NZ_MT496757.1 See Comparison
NZ_CP064230.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore