Plasmid NZ_CP090938.1

Sequence

Nucleotide Information

Accession NZ_CP090938.1
Description Klebsiella pneumoniae strain ONE259 plasmid p1194_11_7, complete sequence
Source refseq
Topology circular
Length 9294 bp
GC Content 0.55 %
Created at NCBI Jan. 19, 2022



Assembly

Genome Data Information

Accession GCF_021496095.1
Assembly Coverage 144


Biosample

Curated Collection Information
Accession 17023568

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.560035S;46.647337W
Original Query Type coordinates
Coordinates (Lat/Lon) -23.56/-46.65
Address Hospital Municipal Infantil Menino Jesus, 251, Rua dos Franceses, Morro dos Ingleses, Bela Vista, São Paulo, Região Imediata de São Paulo, Região Metropolitana de São Paulo, Região Geográfica Intermediária de São Paulo, São Paulo, Southeast Region, 01329-000, Brazil

ECOSYSTEM
Original Query Homo sapiens,catheter
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Medical device-related infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



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based on Mash distance

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NZ_CP066091.1 See Comparison
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NZ_CP061402.1 See Comparison
NZ_CP099262.1 See Comparison
LR890639.1 See Comparison
NZ_LC505458.1 See Comparison
NZ_CP101839.1 See Comparison
CP110573.1 See Comparison
NZ_OP378651.1 See Comparison
NZ_OP378606.1 See Comparison
NZ_ON209487.1 See Comparison
NZ_CP046650.1 See Comparison
NZ_CP053362.1 See Comparison
NZ_CP048782.1 See Comparison
NZ_CP048804.1 See Comparison
CP110600.1 See Comparison
OW849455.1 See Comparison
NZ_CP101894.1 See Comparison
NZ_CP101900.1 See Comparison
NZ_CP104376.1 See Comparison
NZ_CP092595.1 See Comparison
NZ_CP092637.1 See Comparison
NZ_CP098344.1 See Comparison
NZ_CP098341.1 See Comparison
NZ_CP104663.1 See Comparison
NZ_CP103641.1 See Comparison
OW959929.1 See Comparison
OW959912.1 See Comparison
OW967952.1 See Comparison
CP097398.1 See Comparison
OW849293.1 See Comparison
OW849391.1 See Comparison
OW849286.1 See Comparison
OW849280.1 See Comparison
OW849253.1 See Comparison
OW849269.1 See Comparison
CP067864.1 See Comparison
NZ_CP094995.1 See Comparison
NZ_CP095135.1 See Comparison
CP094372.1 See Comparison
CP094916.1 See Comparison
CP094910.1 See Comparison
CP067702.1 See Comparison
CP067513.1 See Comparison
CP088424.1 See Comparison
CP067447.1 See Comparison
NZ_CP089434.1 See Comparison
NZ_CP062989.1 See Comparison
NZ_CP086669.1 See Comparison
NZ_CP077780.1 See Comparison
NZ_CP083003.1 See Comparison
CP086676.1 See Comparison
NZ_CP082901.1 See Comparison
NZ_CP018445.1 See Comparison
CP018672.1 See Comparison
NZ_CP009772.1 See Comparison
CP018348.1 See Comparison
NZ_LS992179.1 See Comparison
NC_020182.1 See Comparison
NC_018953.1 See Comparison
NC_009793.1 See Comparison
NZ_CP022918.1 See Comparison
NZ_CP033818.1 See Comparison
NZ_CP036445.1 See Comparison
NZ_CP032930.1 See Comparison
NZ_CP022921.1 See Comparison
NZ_CP024884.1 See Comparison
NZ_CP032177.1 See Comparison
NZ_CP032199.1 See Comparison
NZ_CP031757.1 See Comparison
NZ_CP031807.1 See Comparison
CP027698.1 See Comparison
NZ_CP022075.1 See Comparison
NZ_CP026710.1 See Comparison
NZ_CP132199.1 See Comparison
NZ_CP023528.1 See Comparison
NZ_CP126795.1 See Comparison
NZ_CP137429.1 See Comparison
NZ_CP137367.1 See Comparison
CP128750.1 See Comparison
NZ_CP130920.1 See Comparison
CP128741.1 See Comparison
CP128674.1 See Comparison
CP151663.1 See Comparison
CP125756.1 See Comparison
NZ_CP150007.1 See Comparison
NZ_CP149998.1 See Comparison
NZ_CP149584.1 See Comparison
NZ_CP125114.1 See Comparison
NZ_CP125141.1 See Comparison
NZ_CP139403.1 See Comparison
NZ_CP125171.1 See Comparison
NZ_CP142968.1 See Comparison
NZ_CP142914.1 See Comparison
NZ_CP141567.1 See Comparison
NZ_MF150124.1 See Comparison
NZ_CP056262.1 See Comparison
NZ_MF150119.1 See Comparison
CP052161.1 See Comparison
CP052312.1 See Comparison
CP052146.1 See Comparison
CP052555.1 See Comparison
CP052210.1 See Comparison
CP052529.1 See Comparison
CP052180.1 See Comparison
CP052548.1 See Comparison
CP052171.1 See Comparison
CP052166.1 See Comparison
CP052486.1 See Comparison
CP052541.1 See Comparison
CP052439.1 See Comparison
CP052536.1 See Comparison
CP052513.1 See Comparison
CP052447.1 See Comparison
CP052428.1 See Comparison
CP052355.1 See Comparison
CP052481.1 See Comparison
CP052424.1 See Comparison
CP052497.1 See Comparison
CP052396.1 See Comparison
CP052206.1 See Comparison
CP052318.1 See Comparison
CP052360.1 See Comparison
CP052238.1 See Comparison
CP052234.1 See Comparison
CP052283.1 See Comparison
CP052191.1 See Comparison
CP052305.1 See Comparison
NZ_CP069823.1 See Comparison
NZ_CP070583.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP089434.1
    • Description: Klebsiella pneumoniae strain 1194 plasmid p1194_7, complete sequence
    • Source: refseq
    • Created at NCBI: Dec. 8, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 5193406
  • GEOGRAPHICAL INFORMATION
    • Original Query: 23.560035S;46.64733699W
    • Original Query Type: coordinates
    • Address: Hospital Municipal Infantil Menino Jesus, 251, Rua dos Franceses, Morro dos Ingleses, Bela Vista, São Paulo, Região Imediata de São Paulo, Região Metropolitana de São Paulo, Região Geográfica Intermediária de São Paulo, São Paulo, Southeast Region, 01329-000, Brazil
    • Coordinates (Lat/Lon): -23.56/-46.65
  • ECOSYSTEM
    • Original Query: Homo sapiens,catheter tip
    • Classification: host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: nosocomial infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore