Plasmid NZ_CP090935.1

Sequence

Nucleotide Information

Accession NZ_CP090935.1
Description Klebsiella pneumoniae strain ONE259 plasmid p1194_11_4, complete sequence
Source refseq
Topology circular
Length 34269 bp
GC Content 0.49 %
Created at NCBI Jan. 19, 2022



Assembly

Genome Data Information

Accession GCF_021496095.1
Assembly Coverage 144


Biosample

Curated Collection Information
Accession 17023568

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.560035S;46.647337W
Original Query Type coordinates
Coordinates (Lat/Lon) -23.56/-46.65
Address Hospital Municipal Infantil Menino Jesus, 251, Rua dos Franceses, Morro dos Ingleses, Bela Vista, São Paulo, Região Imediata de São Paulo, Região Metropolitana de São Paulo, Região Geográfica Intermediária de São Paulo, São Paulo, Southeast Region, 01329-000, Brazil

ECOSYSTEM
Original Query Homo sapiens,catheter
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Medical device-related infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP089431.1
    • Description: Klebsiella pneumoniae strain 1194 plasmid p1194_4, complete sequence
    • Source: refseq
    • Created at NCBI: Dec. 8, 2021

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 5193406
  • GEOGRAPHICAL INFORMATION
    • Original Query: 23.560035S;46.64733699W
    • Original Query Type: coordinates
    • Address: Hospital Municipal Infantil Menino Jesus, 251, Rua dos Franceses, Morro dos Ingleses, Bela Vista, São Paulo, Região Imediata de São Paulo, Região Metropolitana de São Paulo, Região Geográfica Intermediária de São Paulo, São Paulo, Southeast Region, 01329-000, Brazil
    • Coordinates (Lat/Lon): -23.56/-46.65
  • ECOSYSTEM
    • Original Query: Homo sapiens,catheter tip
    • Classification: host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: nosocomial infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore