Plasmid NZ_CP090531.1

Sequence

Nucleotide Information

Accession NZ_CP090531.1
Description Salmonella enterica strain 2008079-SE plasmid p2, complete sequence
Source refseq
Topology circular
Length 3373 bp
GC Content 0.55 %
Created at NCBI Jan. 17, 2022



Assembly

Genome Data Information

Accession GCF_021474265.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 24619911

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Henan
Original Query Type name
Coordinates (Lat/Lon) 34.00/114.00
Address China,Henan

ECOSYSTEM
Original Query Homo sapiens,patient
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Salmonella gastroenteritis
DOID/SYMP
  • Salmonellosis (DOID:0060859 )
    • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP123026.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP103337.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP060923.1 See Comparison
CP100037.1 See Comparison
NZ_CP086228.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP047009.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP103337.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
CP100037.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP086228.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP047009.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP086228.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP103337.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
CP100037.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP047009.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_CP103337.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP060937.1 See Comparison
CP100037.1 See Comparison
NZ_CP086228.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP090531.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP047009.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP103337.1 See Comparison
CP101354.1 See Comparison
NZ_CP086228.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_CP102744.1 See Comparison
CP100037.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP047009.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP103337.1 See Comparison
CP100037.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP086228.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP047009.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP011066.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore