Plasmid NZ_CP089314.1

Sequence

Nucleotide Information

Accession	NZ_CP089314.1
Description	Salmonella enterica subsp. enterica serovar Indiana strain YZ21MCS4 plasmid pYUYZMCS4, complete sequence
Source	refseq
Topology	circular
Length	3374 bp
GC Content	0.55 %
Created at NCBI	Dec. 20, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (286783)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Assembly

Genome Data Information

Accession	GCF_021228955.1
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	23799606

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	32.15N;119.01E
Original Query Type	coordinates
Coordinates (Lat/Lon)	32.15/119.01
Address	站前路, Qixia, Qixia District, Nanjing City, Jiangsu, China

ECOSYSTEM

Original Query	retail chicken meat
Classification	food,meat
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

NZ_CP086228.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP085698.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP050043.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP091676.1	See Comparison
CP100037.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP085698.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP050043.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
NZ_CP091676.1	See Comparison
CP100037.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP085698.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP050043.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
NZ_CP086228.1	See Comparison
CP100037.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP089314.1	See Comparison
NZ_CP085698.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_CP050043.1	See Comparison
NZ_AP022053.1	See Comparison
CP100037.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP085698.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP050043.1	See Comparison
CP100037.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP085698.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP050043.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP103337.1	See Comparison
CP101354.1	See Comparison
CP100037.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP085698.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP045684.1	See Comparison
CP100037.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
NZ_CP050043.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2