Plasmid NZ_CP085698.1

Sequence

Nucleotide Information

Accession	NZ_CP085698.1
Description	Salmonella enterica subsp. enterica serovar Saintpaul strain S25 plasmid unnamed1, complete sequence
Source	refseq
Topology	circular
Length	3373 bp
GC Content	0.55 %
Created at NCBI	Nov. 3, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (90105)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Assembly

Genome Data Information

Accession	GCF_020691705.1
Assembly Coverage	110

Biosample

Curated Collection Information

Accession	22488162

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	22.26N;112.57E
Original Query Type	coordinates
Coordinates (Lat/Lon)	22.26/112.57
Address	Sanxiaocun, Taishan, Jiangmen, Guangdong Province, China

ECOSYSTEM

Original Query	Homo sapiens,stool
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Salmonella gastroenteritis
DOID/SYMP	Salmonellosis (DOID:0060859 ) A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

Visualization

Plasmids from same Biosample

NZ_CP085697.1

Similar Plasmids

based on Mash distance

NZ_CP047009.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP050043.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
CP100037.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP089314.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP050043.1	See Comparison
CP100037.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP089314.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP050043.1	See Comparison
NZ_CP103337.1	See Comparison
CP100037.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP089314.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_CP050043.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
CP100037.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP089314.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
CP100037.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP050043.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP089314.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP050043.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
CP100037.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP060923.1	See Comparison
NZ_CP090531.1	See Comparison
NZ_CP148503.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP089314.1	See Comparison
NZ_CP085698.1	See Comparison
NZ_CP011066.1	See Comparison
NZ_CP035128.1	See Comparison
NZ_CP123026.1	See Comparison
NZ_CP047009.1	See Comparison
NZ_CP150080.1	See Comparison
NZ_CP148489.1	See Comparison
NZ_CP148337.1	See Comparison
NZ_CP045684.1	See Comparison
NZ_CP050043.1	See Comparison
NZ_CP071689.1	See Comparison
NZ_CP102760.1	See Comparison
NZ_AP022053.1	See Comparison
NZ_CP103337.1	See Comparison
NZ_CP102744.1	See Comparison
CP101354.1	See Comparison
NZ_CP060923.1	See Comparison
CP100037.1	See Comparison
NZ_CP086228.1	See Comparison
NZ_CP060937.1	See Comparison
NZ_CP060918.1	See Comparison
NZ_CP091676.1	See Comparison
NZ_CP089314.1	See Comparison
NZ_CP090531.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP050043.1

Sequence

Accession: NZ_CP050043.1
Description: Escherichia coli strain 63-2 plasmid pCD63-2-3, complete sequence
Source: refseq
Created at NCBI: Aug. 11, 2020

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 14278030

GEOGRAPHICAL INFORMATION

Original Query: China,Sichuan
Original Query Type: name
Address: China,Sichuan
Coordinates (Lat/Lon): 30.50/102.50

ECOSYSTEM

Original Query: broiler chicken,cell culture
Classification: cell_culture,host_associated
Host-associated Taxon:
- Gallus gallus (9031)

Visualization

NZ_CP035128.1

Sequence

Accession: NZ_CP035128.1
Description: Escherichia coli strain EC25 plasmid pEC25-5, complete sequence
Source: refseq
Created at NCBI: Jan. 23, 2019

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2