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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP060923.1
Sequence
Nucleotide Information
Accession
NZ_CP060923.1
Description
Escherichia coli strain EC15 plasmid pEC15-5, complete sequence
Source
refseq
Topology
circular
Length
3374 bp
GC Content
0.55 %
Created at NCBI
March 15, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_022558845.1
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
15904659
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
China,Hangzhou
Original Query Type
name
Coordinates (Lat/Lon)
30.25/120.21
Address
China,Hangzhou
ECOSYSTEM
Original Query
Homo sapiens,urine
Classification
host_associated,urinary_system
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP060922.1
NZ_CP060921.1
NZ_CP060920.1
Similar Plasmids
based on Mash distance
NZ_CP123026.1
See Comparison
NZ_CP150080.1
See Comparison
NZ_CP148503.1
See Comparison
NZ_CP148489.1
See Comparison
NZ_CP148337.1
See Comparison
NZ_CP045684.1
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NZ_CP071689.1
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NZ_CP050043.1
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NZ_CP102760.1
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NZ_AP022053.1
See Comparison
NZ_CP103337.1
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NZ_CP102744.1
See Comparison
CP101354.1
See Comparison
CP100037.1
See Comparison
NZ_CP086228.1
See Comparison
NZ_CP060937.1
See Comparison
NZ_CP060918.1
See Comparison
NZ_CP089314.1
See Comparison
NZ_CP090531.1
See Comparison
NZ_CP091676.1
See Comparison
NZ_CP047009.1
See Comparison
NZ_CP085698.1
See Comparison
NZ_CP150080.1
See Comparison
NZ_CP011066.1
See Comparison
NZ_CP035128.1
See Comparison
NZ_CP123026.1
See Comparison
NZ_CP102760.1
See Comparison
NZ_CP045684.1
See Comparison
NZ_CP071689.1
See Comparison
NZ_CP050043.1
See Comparison
NZ_CP103337.1
See Comparison
NZ_CP148503.1
See Comparison
NZ_CP148489.1
See Comparison
NZ_CP148337.1
See Comparison
NZ_AP022053.1
See Comparison
NZ_CP102744.1
See Comparison
CP101354.1
See Comparison
NZ_CP086228.1
See Comparison
CP100037.1
See Comparison
NZ_CP091676.1
See Comparison
NZ_CP090531.1
See Comparison
NZ_CP089314.1
See Comparison
NZ_CP060937.1
See Comparison
NZ_CP060923.1
See Comparison
NZ_CP060918.1
See Comparison
NZ_CP047009.1
See Comparison
NZ_CP085698.1
See Comparison
NZ_CP035128.1
See Comparison
NZ_CP011066.1
See Comparison
NZ_CP123026.1
See Comparison
NZ_CP150080.1
See Comparison
NZ_CP148503.1
See Comparison
NZ_CP148489.1
See Comparison
NZ_CP148337.1
See Comparison
NZ_CP071689.1
See Comparison
NZ_CP045684.1
See Comparison
NZ_AP022053.1
See Comparison
NZ_CP050043.1
See Comparison
NZ_CP103337.1
See Comparison
CP101354.1
See Comparison
NZ_CP102760.1
See Comparison
NZ_CP102744.1
See Comparison
NZ_CP060937.1
See Comparison
CP100037.1
See Comparison
NZ_CP086228.1
See Comparison
NZ_CP060918.1
See Comparison
NZ_CP089314.1
See Comparison
NZ_CP091676.1
See Comparison
NZ_CP090531.1
See Comparison
NZ_CP047009.1
See Comparison
NZ_CP085698.1
See Comparison
NZ_CP011066.1
See Comparison
NZ_CP148503.1
See Comparison
NZ_CP035128.1
See Comparison
NZ_CP123026.1
See Comparison
NZ_CP150080.1
See Comparison
NZ_CP148489.1
See Comparison
NZ_CP148337.1
See Comparison
NZ_CP045684.1
See Comparison
NZ_CP071689.1
See Comparison
NZ_CP050043.1
See Comparison
NZ_CP086228.1
See Comparison
NZ_AP022053.1
See Comparison
NZ_CP102760.1
See Comparison
NZ_CP102744.1
See Comparison
CP101354.1
See Comparison
NZ_CP103337.1
See Comparison
CP100037.1
See Comparison
NZ_CP091676.1
See Comparison
NZ_CP060937.1
See Comparison
NZ_CP060918.1
See Comparison
NZ_CP090531.1
See Comparison
NZ_CP047009.1
See Comparison
NZ_CP089314.1
See Comparison
NZ_CP085698.1
See Comparison
NZ_CP148503.1
See Comparison
NZ_CP011066.1
See Comparison
NZ_CP123026.1
See Comparison
NZ_CP150080.1
See Comparison
NZ_CP035128.1
See Comparison
NZ_CP148489.1
See Comparison
NZ_CP148337.1
See Comparison
NZ_CP071689.1
See Comparison
NZ_CP045684.1
See Comparison
NZ_AP022053.1
See Comparison
NZ_CP086228.1
See Comparison
NZ_CP102760.1
See Comparison
NZ_CP102744.1
See Comparison
CP101354.1
See Comparison
NZ_CP050043.1
See Comparison
NZ_CP103337.1
See Comparison
CP100037.1
See Comparison
NZ_CP091676.1
See Comparison
NZ_CP060937.1
See Comparison
NZ_CP060918.1
See Comparison
NZ_CP090531.1
See Comparison
NZ_CP035128.1
See Comparison
NZ_CP089314.1
See Comparison
NZ_CP085698.1
See Comparison
NZ_CP047009.1
See Comparison
NZ_CP011066.1
See Comparison
NZ_CP148503.1
See Comparison
NZ_CP123026.1
See Comparison
NZ_CP150080.1
See Comparison
NZ_CP148489.1
See Comparison
NZ_CP148337.1
See Comparison
NZ_AP022053.1
See Comparison
NZ_CP045684.1
See Comparison
NZ_CP071689.1
See Comparison
NZ_CP050043.1
See Comparison
NZ_CP091676.1
See Comparison
NZ_CP103337.1
See Comparison
NZ_CP102760.1
See Comparison
NZ_CP102744.1
See Comparison
CP101354.1
See Comparison
NZ_CP086228.1
See Comparison
NZ_CP060937.1
See Comparison
NZ_CP060918.1
See Comparison
CP100037.1
See Comparison
NZ_CP047009.1
See Comparison
NZ_CP011066.1
See Comparison
NZ_CP035128.1
See Comparison
NZ_CP090531.1
See Comparison
NZ_CP089314.1
See Comparison
NZ_CP085698.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore