Plasmid NZ_CP047009.1

Sequence

Nucleotide Information

Accession NZ_CP047009.1
Description Escherichia coli strain J-8 plasmid p2, complete sequence
Source refseq
Topology circular
Length 3373 bp
GC Content 0.55 %
Created at NCBI May 12, 2021



Assembly

Genome Data Information

Accession GCF_018279085.1
Assembly Coverage 80


Biosample

Curated Collection Information
Accession 13563033

PLASMID INFORMATION
Genotype ST156

GEOGRAPHICAL INFORMATION
Original Query 34.16N;108.02E
Original Query Type coordinates
Coordinates (Lat/Lon) 34.16/108.02
Address Zhouzhi County, Xi'an, Shaanxi, China

ECOSYSTEM
Original Query chicken,whole organism,intestinal and liver
Classification gastrointestinal_system,host_associated,liver
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP150080.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP103337.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP086228.1 See Comparison
CP100037.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP090531.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP103337.1 See Comparison
CP100037.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
NZ_CP086228.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP090531.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP103337.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
NZ_CP086228.1 See Comparison
CP100037.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP090531.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP103337.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
CP100037.1 See Comparison
NZ_CP086228.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP090531.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_AP022053.1 See Comparison
CP100037.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
NZ_CP103337.1 See Comparison
NZ_CP086228.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP090531.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP103337.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
NZ_CP086228.1 See Comparison
CP100037.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP090531.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP047009.1 See Comparison
NZ_CP148337.1 See Comparison
NZ_CP035128.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP150080.1 See Comparison
NZ_CP045684.1 See Comparison
NZ_CP071689.1 See Comparison
NZ_CP050043.1 See Comparison
NZ_CP103337.1 See Comparison
CP100037.1 See Comparison
NZ_CP060937.1 See Comparison
NZ_CP060923.1 See Comparison
NZ_CP060918.1 See Comparison
NZ_CP090531.1 See Comparison
NZ_CP089314.1 See Comparison
NZ_CP123026.1 See Comparison
NZ_CP148503.1 See Comparison
NZ_CP148489.1 See Comparison
NZ_AP022053.1 See Comparison
NZ_CP102760.1 See Comparison
NZ_CP102744.1 See Comparison
CP101354.1 See Comparison
NZ_CP086228.1 See Comparison
NZ_CP091676.1 See Comparison
NZ_CP085698.1 See Comparison
NZ_CP011066.1 See Comparison
NZ_CP035128.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2