Plasmid NZ_CP090394.1
Sequence
Nucleotide Information
| Accession | NZ_CP090394.1 |
|---|---|
| Description | Klebsiella pneumoniae strain YZH2429 plasmid pYUYZH2429-1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 249955 bp |
| GC Content | 0.52 % |
| Created at NCBI | Jan. 12, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 24499277 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 32.15N;119.01E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 32.15/119.01 |
| Address | 站前路, Qixia, Qixia District, Nanjing City, Jiangsu, China |
ECOSYSTEM
| Original Query | Homo sapiens,sputum |
|---|---|
| Classification | host_associated,respiratory_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | Multiple injury |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | catB3 | copy | ||
| amrfinderplus | pcoS | copy | ||
| rgi | AAC(6')-Ib-cr6 | copy | ||
| amrfinderplus | pcoD | copy | ||
| amrfinderplus | pcoB | copy | ||
| amrfinderplus | pcoC | copy | ||
| amrfinderplus | qnrB1 | copy | ||
| amrfinderplus | pcoA | copy | ||
| amrfinderplus | pcoR | copy | ||
| amrfinderplus | silA | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 243 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_021502_00150 | MPF_T | 189177 | 191486 | minus | 99.351 | 100 | 0 | 1452 |
| mate-pair-formation | NC_019155_00032 | MPF_F | 194059 | 196914 | minus | 92.437 | 99 | 0 | 1700 |
| mate-pair-formation | NC_019165_00034 | MPF_F | 196920 | 198272 | minus | 95.344 | 99 | 0 | 797 |
| mate-pair-formation | NC_021654_00016 | MPF_F | 201166 | 203127 | minus | 98.471 | 98 | 0 | 1243 |
| mate-pair-formation | NC_011281_00082 | MPF_F | 203180 | 203824 | minus | 95.349 | 100 | 9.96e-125 | 395 |
| mate-pair-formation | NC_022609_00081 | MPF_F | 204103 | 205089 | minus | 95.152 | 100 | 0 | 652 |
| mate-pair-formation | NC_014312_00128 | MPF_F | 205525 | 206157 | minus | 99.052 | 100 | 4.46e-126 | 398 |
| mate-pair-formation | NC_021502_00131 | MPF_T | 206549 | 209185 | minus | 95.108 | 100 | 0 | 1736 |
| mate-pair-formation | NC_019389_00068 | MPF_F | 211959 | 212474 | minus | 94.186 | 89 | 3.73e-104 | 335 |
| mate-pair-formation | NC_023332_00154 | MPF_F | 213155 | 214576 | minus | 99.578 | 100 | 0 | 791 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 16 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |