Plasmid NZ_CP082969.1
Sequence
Nucleotide Information
| Accession | NZ_CP082969.1 |
|---|---|
| Description | Klebsiella pneumoniae strain BD-41 plasmid p2-BD-41-OXA48, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 63675 bp |
| GC Content | 0.51 % |
| Created at NCBI | Dec. 11, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 21016516 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 46.9321N;7.4199E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 46.93/7.42 |
| Address | Labor Dr. Risch, Kohlenweg, Liebefeld, Köniz, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3097, Switzerland |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaOXA-48 | copy | ||
| PGAG | repA | copy | ||
| PGAG | dqlB | copy | ||
| PGAG | conjugal transfer protein TrbC | copy | ||
| PGAG | DsbC family protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | lytic transglycosylase domain-containing protein | copy | ||
| PGAG | DUF1496 domain-containing protein | copy | ||
| PGAG | IS4-like element IS10A family transposase | copy | ||
| PGAG | IS1-like element IS1B family transposase | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 93 entries
…
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_004464_00056 | MOBP | 40635 | 42611 | plus | 99.697 | 100 | 0 | 1378 |
| mate-pair-formation | NC_004464_00105 | MPF_I | 2428 | 4512 | minus | 99.424 | 100 | 0 | 1407 |
| mate-pair-formation | NC_005246_00057 | MPF_I | 43167 | 43901 | plus | 99.592 | 95 | 2.01e-162 | 505 |
| mate-pair-formation | NC_019063_00094 | MPF_I | 48756 | 49265 | plus | 99.412 | 100 | 1.74e-108 | 346 |
| mate-pair-formation | NC_019344_00078 | MPF_I | 49931 | 50641 | plus | 99.156 | 100 | 2.03e-129 | 409 |
| mate-pair-formation | NC_004464_00066 | MPF_I | 50653 | 51801 | plus | 99.739 | 100 | 0 | 648 |
| mate-pair-formation | NC_004464_00068 | MPF_I | 53177 | 53878 | plus | 94.444 | 100 | 5.89e-127 | 402 |
| mate-pair-formation | NC_019154_00069 | MPF_I | 53905 | 54432 | plus | 100 | 100 | 8.71e-100 | 321 |
| mate-pair-formation | NC_005246_00069 | MPF_I | 54452 | 54838 | plus | 99.225 | 100 | 4.78e-65 | 219 |
| mate-pair-formation | NC_004464_00073 | MPF_I | 58425 | 59630 | plus | 100 | 100 | 0 | 783 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 11 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |