Plasmid OW849175.1
Sequence
Nucleotide Information
Accession | OW849175.1 |
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Description | Enterobacter cloacae isolate 66 genome assembly, plasmid: P2 |
Source | insd |
Topology | circular |
Length | 63570 bp |
GC Content | 0.51 % |
Created at NCBI | May 14, 2022 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Enterobacter cloacae (550) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Enterobacter (547) |
Species | Enterobacter_cloacae (550) |
Strain |
Biosample
Curated Collection Information
Accession | 22316682 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | Spain |
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Original Query Type | name |
Coordinates (Lat/Lon) | 39.33/-4.84 |
Address | Spain |
ECOSYSTEM
Original Query | Homo sapiens,Hospital Universitario Central de Asturias (Oviedo) |
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Classification | anthropogenic,hospital,host_associated,location |
Host-associated Taxon |
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DISEASE
Original Query | diseased |
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DOID/SYMP |
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Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
amrfinderplus | blaOXA-48 | copy | ||
PGAG | Replication initiation protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 96 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
---|---|---|---|---|---|---|---|
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
---|---|---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
relaxase | NC_004464_00056 | MOBP | 40530 | 42506 | plus | 99.697 | 100 | 0 | 1378 |
mate-pair-formation | NC_004464_00105 | MPF_I | 2428 | 4512 | minus | 99.424 | 100 | 0 | 1407 |
mate-pair-formation | NC_005246_00057 | MPF_I | 43062 | 43796 | plus | 99.592 | 95 | 2.01e-162 | 505 |
mate-pair-formation | NC_019063_00094 | MPF_I | 48651 | 49160 | plus | 99.412 | 100 | 1.74e-108 | 346 |
mate-pair-formation | NC_019344_00078 | MPF_I | 49826 | 50536 | plus | 99.156 | 100 | 2.03e-129 | 409 |
mate-pair-formation | NC_004464_00066 | MPF_I | 50548 | 51696 | plus | 99.739 | 100 | 0 | 648 |
mate-pair-formation | NC_004464_00068 | MPF_I | 53072 | 53773 | plus | 94.872 | 100 | 5.559999999999996e-128 | 405 |
mate-pair-formation | NC_019154_00069 | MPF_I | 53800 | 54327 | plus | 100 | 100 | 8.71e-100 | 321 |
mate-pair-formation | NC_005246_00069 | MPF_I | 54347 | 54733 | plus | 99.225 | 100 | 4.78e-65 | 219 |
mate-pair-formation | NC_004464_00073 | MPF_I | 58320 | 59525 | plus | 100 | 100 | 0 | 783 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 11 entries