Plasmid NZ_CP018736.1
Sequence
Nucleotide Information
Accession | NZ_CP018736.1 |
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Description | Klebsiella pneumoniae strain Kp_Goe_121641 plasmid pKp_Goe_641-2 |
Source | refseq |
Topology | linear |
Length | 63589 bp |
GC Content | 0.51 % |
Created at NCBI | Dec. 22, 2016 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Klebsiella pneumoniae (573) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Klebsiella (570) |
Species | Klebsiella_pneumoniae (573) |
Strain |
Biosample
Curated Collection Information
Accession | 5412452 |
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PLASMID INFORMATION
Genotype | MLST ST101 |
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GEOGRAPHICAL INFORMATION
Original Query | 51.53919016N;9.91156249E |
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Original Query Type | coordinates |
Coordinates (Lat/Lon) | 51.54/9.91 |
Address | Königsstieg, Egelsberg, Weststadt, Göttingen, Landkreis Göttingen, Lower Saxony, 37081, Germany |
ECOSYSTEM
Original Query | Homo sapiens,urine sample |
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Classification | host_associated,urinary_system |
Host-associated Taxon |
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Host-associated Age | 32 |
Host-associated Sex | male |
DISEASE
Original Query | Urinary tract infection |
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DOID/SYMP |
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Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
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B
Source | Element Name | Display | Sequence | Favorite |
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amrfinderplus | blaOXA-48 | copy | ||
PGAG | DotA/TraY family protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | repC | copy | ||
PGAG | repA | copy | ||
PGAG | dqlB | copy | ||
PGAG | conjugal transfer protein TrbC | copy | ||
PGAG | DsbC family protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | lytic transglycosylase domain-containing protein | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 94 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
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NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
mate-pair-formation | NC_004464_00105 | MPF_I | 4905 | 6989 | minus | 99.424 | 100 | 0 | 1407 |
mate-pair-formation | NC_005246_00057 | MPF_I | 45558 | 46292 | plus | 99.592 | 95 | 2.01e-162 | 505 |
mate-pair-formation | NC_019063_00094 | MPF_I | 51147 | 51656 | plus | 99.412 | 100 | 1.74e-108 | 346 |
mate-pair-formation | NC_019344_00078 | MPF_I | 52322 | 53032 | plus | 99.156 | 100 | 2.03e-129 | 409 |
mate-pair-formation | NC_004464_00066 | MPF_I | 53044 | 54192 | plus | 99.739 | 100 | 0 | 648 |
mate-pair-formation | NC_004464_00068 | MPF_I | 55568 | 56269 | plus | 94.872 | 100 | 5.559999999999996e-128 | 405 |
mate-pair-formation | NC_019154_00069 | MPF_I | 56296 | 56823 | plus | 100 | 100 | 8.71e-100 | 321 |
mate-pair-formation | NC_005246_00069 | MPF_I | 56843 | 57229 | plus | 99.225 | 100 | 4.78e-65 | 219 |
mate-pair-formation | NC_004464_00073 | MPF_I | 60816 | 62021 | plus | 100 | 100 | 0 | 783 |
relaxase | NC_004464_00056 | MOBP | 43026 | 45002 | plus | 99.545 | 100 | 0 | 1373 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 11 entries
Detected typing markers by plasmidfinder
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
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NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |