Plasmid NZ_CP068877.1

Sequence

Nucleotide Information

Accession NZ_CP068877.1
Description Klebsiella pneumoniae strain RIVM_C016910 plasmid pRIVM_C016910_2, complete sequence
Source refseq
Topology circular
Length 62491 bp
GC Content 0.51 %
Created at NCBI Feb. 3, 2021



Biosample

Curated Collection Information
Accession 17304630

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Netherlands
Original Query Type name
Coordinates (Lat/Lon) 52.24/5.53
Address Netherlands

ECOSYSTEM
Original Query Homo sapiens,Plasmid
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP020844.1 See Comparison
NZ_CP135496.1 See Comparison
NZ_OQ127402.1 See Comparison
CP128708.1 See Comparison
CP128713.1 See Comparison
NZ_CP068832.1 See Comparison
NZ_KX636096.1 See Comparison
NZ_CP068950.1 See Comparison
NZ_CP068947.1 See Comparison
NZ_KY215945.1 See Comparison
NZ_KP659188.1 See Comparison
NZ_CP068928.1 See Comparison
NZ_CP068948.1 See Comparison
NZ_CP068862.1 See Comparison
NZ_CP068880.1 See Comparison
NZ_CP068873.1 See Comparison
NZ_CP068844.1 See Comparison
NZ_CP068335.1 See Comparison
NZ_CP068326.1 See Comparison
NZ_CP068342.1 See Comparison
NZ_CP068332.1 See Comparison
NZ_OW969782.1 See Comparison
NZ_CP068312.1 See Comparison
OW970323.1 See Comparison
OW967032.1 See Comparison
OW967785.1 See Comparison
NZ_CP083053.1 See Comparison
NZ_CP083064.1 See Comparison
NZ_CP082969.1 See Comparison
NZ_CP135496.1 See Comparison
NZ_CP020844.1 See Comparison
CP128708.1 See Comparison
NZ_OQ127402.1 See Comparison
CP128713.1 See Comparison
NZ_KY215945.1 See Comparison
NZ_KP659188.1 See Comparison
NZ_KX636096.1 See Comparison
NZ_CP068928.1 See Comparison
NZ_CP068950.1 See Comparison
NZ_CP068948.1 See Comparison
NZ_CP068947.1 See Comparison
NZ_CP068873.1 See Comparison
NZ_CP068335.1 See Comparison
NZ_CP068844.1 See Comparison
NZ_CP068832.1 See Comparison
NZ_CP068862.1 See Comparison
NZ_CP068880.1 See Comparison
NZ_OW969782.1 See Comparison
NZ_CP068326.1 See Comparison
NZ_CP068342.1 See Comparison
NZ_CP068332.1 See Comparison
NZ_CP068312.1 See Comparison
OW970323.1 See Comparison
OW967785.1 See Comparison
NZ_CP083053.1 See Comparison
OW967032.1 See Comparison
NZ_CP082969.1 See Comparison
NZ_CP083064.1 See Comparison
NZ_CP020844.1 See Comparison
NZ_OQ127402.1 See Comparison
NZ_CP135496.1 See Comparison
NZ_CP068950.1 See Comparison
NZ_KX636096.1 See Comparison
NZ_CP068947.1 See Comparison
CP128708.1 See Comparison
CP128713.1 See Comparison
NZ_KY215945.1 See Comparison
NZ_KP659188.1 See Comparison
NZ_CP068948.1 See Comparison
NZ_CP068832.1 See Comparison
NZ_CP068873.1 See Comparison
NZ_CP068862.1 See Comparison
NZ_CP068928.1 See Comparison
NZ_CP068880.1 See Comparison
NZ_CP068844.1 See Comparison
NZ_CP068877.1 See Comparison
NZ_CP068342.1 See Comparison
NZ_CP068335.1 See Comparison
NZ_CP068332.1 See Comparison
NZ_CP068326.1 See Comparison
NZ_CP068312.1 See Comparison
NZ_OQ127402.1 See Comparison
NZ_OW969782.1 See Comparison
OW967785.1 See Comparison
NZ_CP135496.1 See Comparison
OW970323.1 See Comparison
OW967032.1 See Comparison
NZ_CP083053.1 See Comparison
NZ_CP083064.1 See Comparison
NZ_CP082969.1 See Comparison
NZ_CP020844.1 See Comparison
NZ_CP068928.1 See Comparison
CP128708.1 See Comparison
CP128713.1 See Comparison
NZ_KX636096.1 See Comparison
NZ_KY215945.1 See Comparison
NZ_KP659188.1 See Comparison
NZ_CP068950.1 See Comparison
NZ_CP068947.1 See Comparison
NZ_CP068948.1 See Comparison
NZ_CP068862.1 See Comparison
NZ_CP068880.1 See Comparison
NZ_CP068873.1 See Comparison
NZ_CP068335.1 See Comparison
NZ_CP068832.1 See Comparison
NZ_CP068844.1 See Comparison
OW970323.1 See Comparison
NZ_CP068312.1 See Comparison
NZ_OW969782.1 See Comparison
NZ_CP068326.1 See Comparison
NZ_CP068342.1 See Comparison
NZ_CP068332.1 See Comparison
NZ_CP083053.1 See Comparison
OW967785.1 See Comparison
OW967032.1 See Comparison
NZ_CP083064.1 See Comparison
NZ_CP082969.1 See Comparison
NZ_CP020844.1 See Comparison
CP128713.1 See Comparison
NZ_CP135496.1 See Comparison
NZ_KX636096.1 See Comparison
NZ_OQ127402.1 See Comparison
CP128708.1 See Comparison
NZ_KY215945.1 See Comparison
NZ_KP659188.1 See Comparison
NZ_CP068873.1 See Comparison
NZ_CP068950.1 See Comparison
NZ_CP068928.1 See Comparison
NZ_CP068948.1 See Comparison
NZ_CP068862.1 See Comparison
NZ_CP068832.1 See Comparison
NZ_CP068880.1 See Comparison
NZ_CP068947.1 See Comparison
NZ_CP068844.1 See Comparison
NZ_CP068335.1 See Comparison
NZ_CP068326.1 See Comparison
NZ_CP068342.1 See Comparison
NZ_CP068312.1 See Comparison
NZ_CP068332.1 See Comparison
OW967785.1 See Comparison
NZ_OW969782.1 See Comparison
OW970323.1 See Comparison
NZ_CP083053.1 See Comparison
OW967032.1 See Comparison
NZ_CP083064.1 See Comparison
NZ_CP082969.1 See Comparison
NZ_CP020844.1 See Comparison
NZ_OQ127402.1 See Comparison
NZ_CP135496.1 See Comparison
CP128708.1 See Comparison
NZ_KY215945.1 See Comparison
CP128713.1 See Comparison
NZ_CP068950.1 See Comparison
NZ_KX636096.1 See Comparison
NZ_KP659188.1 See Comparison
NZ_CP068947.1 See Comparison
NZ_CP068873.1 See Comparison
NZ_CP068880.1 See Comparison
NZ_OW969782.1 See Comparison
NZ_CP068832.1 See Comparison
NZ_CP068862.1 See Comparison
NZ_CP068335.1 See Comparison
NZ_CP068928.1 See Comparison
NZ_CP068948.1 See Comparison
NZ_CP068844.1 See Comparison
NZ_CP068326.1 See Comparison
NZ_CP068342.1 See Comparison
NZ_CP068332.1 See Comparison
NZ_CP068312.1 See Comparison
OW967785.1 See Comparison
OW970323.1 See Comparison
NZ_CP082969.1 See Comparison
OW967032.1 See Comparison
NZ_CP083064.1 See Comparison
NZ_CP083053.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore