Plasmid NZ_CP068935.1
Sequence
Nucleotide Information
| Accession | NZ_CP068935.1 |
|---|---|
| Description | Klebsiella pneumoniae strain RIVM_C029531 plasmid pRIVM_C029531_3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 63589 bp |
| GC Content | 0.51 % |
| Created at NCBI | Feb. 3, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 17304751 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Netherlands |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 52.24/5.53 |
| Address | Netherlands |
ECOSYSTEM
| Original Query | Homo sapiens,Plasmid |
|---|---|
| Classification | cell_culture,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaOXA-48 | copy | ||
| PGAG | repA | copy | ||
| PGAG | dqlB | copy | ||
| PGAG | conjugal transfer protein TrbC | copy | ||
| PGAG | DsbC family protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | lytic transglycosylase domain-containing protein | copy | ||
| PGAG | DUF1496 domain-containing protein | copy | ||
| PGAG | IS4-like element IS10A family transposase | copy | ||
| PGAG | IS1-like element IS1B family transposase | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 94 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | JN626286 | IncL/M | 62998 | 63589 | plus | 100 | 100 | 0 | 1094 |
| relaxase | NC_004464_00056 | MOBP | 40549 | 42525 | plus | 99.697 | 100 | 0 | 1378 |
| mate-pair-formation | NC_004464_00105 | MPF_I | 2428 | 4512 | minus | 99.424 | 100 | 0 | 1407 |
| mate-pair-formation | NC_005246_00057 | MPF_I | 43081 | 43815 | plus | 99.592 | 95 | 2.01e-162 | 505 |
| mate-pair-formation | NC_019063_00094 | MPF_I | 48670 | 49179 | plus | 99.412 | 100 | 1.74e-108 | 346 |
| mate-pair-formation | NC_019344_00078 | MPF_I | 49845 | 50555 | plus | 99.156 | 100 | 2.03e-129 | 409 |
| mate-pair-formation | NC_004464_00066 | MPF_I | 50567 | 51715 | plus | 99.739 | 100 | 0 | 648 |
| mate-pair-formation | NC_004464_00068 | MPF_I | 53091 | 53792 | plus | 94.872 | 100 | 5.559999999999996e-128 | 405 |
| mate-pair-formation | NC_019154_00069 | MPF_I | 53819 | 54346 | plus | 100 | 100 | 8.71e-100 | 321 |
| mate-pair-formation | NC_005246_00069 | MPF_I | 54366 | 54752 | plus | 99.225 | 100 | 4.78e-65 | 219 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 11 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |