Plasmid NZ_CP074536.1

Sequence

Nucleotide Information

Accession NZ_CP074536.1
Description Klebsiella pneumoniae strain S16_CRE16 plasmid pCRE16_1, complete sequence
Source refseq
Topology circular
Length 212193 bp
GC Content 0.53 %
Created at NCBI Jan. 12, 2023



Assembly

Genome Data Information

Accession GCF_027595645.1
Assembly Coverage 335


Biosample

Curated Collection Information
Accession 16387635

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 36.0075N;78.9384W
Original Query Type coordinates
Coordinates (Lat/Lon) 36.01/-78.94
Address Duke University Hospital, 2301, Erwin Road, Crest Street, Durham, Durham County, North Carolina, 27710, United States

ECOSYSTEM
Original Query Homo sapiens,tissue, L hip
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacterial infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP068620.1 See Comparison
NZ_CP068616.1 See Comparison
NZ_CP074542.1 See Comparison
NZ_CP110948.1 See Comparison
NZ_CP110963.1 See Comparison
NZ_CP110958.1 See Comparison
CP067832.1 See Comparison
CP067818.1 See Comparison
CP067805.1 See Comparison
CP067786.1 See Comparison
CP067770.1 See Comparison
CP067665.1 See Comparison
NZ_CP070083.1 See Comparison
CP067658.1 See Comparison
CP067623.1 See Comparison
NZ_CP020838.1 See Comparison
NZ_CP020072.1 See Comparison
NZ_CP018430.1 See Comparison
NZ_CP018434.1 See Comparison
NZ_CP018424.1 See Comparison
NZ_CP018355.1 See Comparison
NZ_CP010393.1 See Comparison
NZ_CP136406.1 See Comparison
CP128730.1 See Comparison
CP128766.1 See Comparison
CP067455.1 See Comparison
NZ_CP021834.1 See Comparison
NZ_CP021752.1 See Comparison
NZ_CP021544.1 See Comparison
NZ_CP021713.1 See Comparison
NZ_CP009777.1 See Comparison
NZ_CP043049.1 See Comparison
NZ_CP030343.1 See Comparison
NZ_CP027152.1 See Comparison
NZ_CP027161.1 See Comparison
NZ_CP068620.1 See Comparison
NZ_CP068616.1 See Comparison
NZ_CP074542.1 See Comparison
CP067665.1 See Comparison
NZ_CP110948.1 See Comparison
CP067832.1 See Comparison
CP067818.1 See Comparison
CP067805.1 See Comparison
CP067786.1 See Comparison
CP067770.1 See Comparison
NZ_CP110963.1 See Comparison
NZ_CP110958.1 See Comparison
CP067658.1 See Comparison
CP067623.1 See Comparison
CP067455.1 See Comparison
NZ_CP021834.1 See Comparison
NZ_CP021752.1 See Comparison
NZ_CP021544.1 See Comparison
NZ_CP021713.1 See Comparison
NZ_CP020072.1 See Comparison
NZ_CP020838.1 See Comparison
NZ_CP009777.1 See Comparison
NZ_CP018430.1 See Comparison
NZ_CP018434.1 See Comparison
NZ_CP018424.1 See Comparison
NZ_CP018355.1 See Comparison
NZ_CP027152.1 See Comparison
NZ_CP030343.1 See Comparison
NZ_CP010393.1 See Comparison
NZ_CP043049.1 See Comparison
NZ_CP027161.1 See Comparison
NZ_CP110948.1 See Comparison
NZ_CP136406.1 See Comparison
CP128730.1 See Comparison
CP128766.1 See Comparison
NZ_CP074542.1 See Comparison
NZ_CP070083.1 See Comparison
NZ_CP068620.1 See Comparison
NZ_CP068616.1 See Comparison
NZ_CP110958.1 See Comparison
NZ_CP110963.1 See Comparison
CP067665.1 See Comparison
CP067832.1 See Comparison
CP067818.1 See Comparison
CP067805.1 See Comparison
CP067786.1 See Comparison
CP067658.1 See Comparison
CP067770.1 See Comparison
CP067623.1 See Comparison
NZ_CP021834.1 See Comparison
CP067455.1 See Comparison
NZ_CP021752.1 See Comparison
NZ_CP021544.1 See Comparison
NZ_CP021713.1 See Comparison
NZ_CP020838.1 See Comparison
NZ_CP020072.1 See Comparison
NZ_CP027152.1 See Comparison
NZ_CP018430.1 See Comparison
NZ_CP018434.1 See Comparison
NZ_CP018424.1 See Comparison
NZ_CP018355.1 See Comparison
NZ_CP010393.1 See Comparison
NZ_CP043049.1 See Comparison
NZ_CP009777.1 See Comparison
NZ_CP030343.1 See Comparison
NZ_CP027161.1 See Comparison
NZ_CP110948.1 See Comparison
CP128730.1 See Comparison
CP128766.1 See Comparison
NZ_CP070083.1 See Comparison
NZ_CP068620.1 See Comparison
NZ_CP068616.1 See Comparison
NZ_CP074542.1 See Comparison
NZ_CP136406.1 See Comparison
NZ_CP110963.1 See Comparison
NZ_CP110958.1 See Comparison
CP067455.1 See Comparison
CP067832.1 See Comparison
CP067818.1 See Comparison
CP067805.1 See Comparison
CP067786.1 See Comparison
CP067770.1 See Comparison
CP067665.1 See Comparison
CP067658.1 See Comparison
CP067623.1 See Comparison
NZ_CP027152.1 See Comparison
NZ_CP021834.1 See Comparison
NZ_CP021752.1 See Comparison
NZ_CP021544.1 See Comparison
NZ_CP021713.1 See Comparison
NZ_CP020838.1 See Comparison
NZ_CP018430.1 See Comparison
NZ_CP009777.1 See Comparison
NZ_CP030343.1 See Comparison
NZ_CP020072.1 See Comparison
NZ_CP018434.1 See Comparison
NZ_CP018424.1 See Comparison
NZ_CP018355.1 See Comparison
NZ_CP010393.1 See Comparison
NZ_CP043049.1 See Comparison
NZ_CP027161.1 See Comparison
CP128730.1 See Comparison
NZ_CP136406.1 See Comparison
CP128766.1 See Comparison
NZ_CP068616.1 See Comparison
NZ_CP070083.1 See Comparison
CP067665.1 See Comparison
NZ_CP068620.1 See Comparison
NZ_CP110948.1 See Comparison
NZ_CP110963.1 See Comparison
NZ_CP110958.1 See Comparison
CP067832.1 See Comparison
CP067818.1 See Comparison
CP067805.1 See Comparison
NZ_CP074542.1 See Comparison
CP067658.1 See Comparison
CP067786.1 See Comparison
CP067623.1 See Comparison
CP067770.1 See Comparison
NZ_CP030343.1 See Comparison
NZ_CP021834.1 See Comparison
NZ_CP021752.1 See Comparison
NZ_CP021544.1 See Comparison
NZ_CP021713.1 See Comparison
NZ_CP020838.1 See Comparison
NZ_CP018424.1 See Comparison
NZ_CP018355.1 See Comparison
NZ_CP010393.1 See Comparison
NZ_CP043049.1 See Comparison
CP067455.1 See Comparison
NZ_CP020072.1 See Comparison
NZ_CP018430.1 See Comparison
NZ_CP018434.1 See Comparison
NZ_CP009777.1 See Comparison
NZ_CP027152.1 See Comparison
NZ_CP027161.1 See Comparison
CP128730.1 See Comparison
NZ_CP136406.1 See Comparison
CP128766.1 See Comparison
NZ_CP110963.1 See Comparison
NZ_CP068620.1 See Comparison
NZ_CP068616.1 See Comparison
NZ_CP070083.1 See Comparison
NZ_CP074536.1 See Comparison
NZ_CP074542.1 See Comparison
NZ_CP110958.1 See Comparison
CP067455.1 See Comparison
CP067832.1 See Comparison
CP067818.1 See Comparison
CP067805.1 See Comparison
CP067786.1 See Comparison
CP067770.1 See Comparison
CP067665.1 See Comparison
CP067658.1 See Comparison
NZ_CP110948.1 See Comparison
CP067623.1 See Comparison
NZ_CP020072.1 See Comparison
NZ_CP021752.1 See Comparison
NZ_CP018430.1 See Comparison
NZ_CP021544.1 See Comparison
NZ_CP021713.1 See Comparison
NZ_CP020838.1 See Comparison
NZ_CP021834.1 See Comparison
NZ_CP018434.1 See Comparison
NZ_CP018424.1 See Comparison
NZ_CP018355.1 See Comparison
NZ_CP009777.1 See Comparison
NZ_CP136406.1 See Comparison
NZ_CP010393.1 See Comparison
NZ_CP030343.1 See Comparison
NZ_CP027152.1 See Comparison
NZ_CP027161.1 See Comparison
NZ_CP043049.1 See Comparison
CP128730.1 See Comparison
CP128766.1 See Comparison
NZ_CP070083.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore