Plasmid CP067455.1
Sequence
Nucleotide Information
| Accession | CP067455.1 |
|---|---|
| Description | Klebsiella pneumoniae strain ARLG-4884 plasmid pC877_1, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 210201 bp |
| GC Content | 0.53 % |
| Created at NCBI | March 1, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 15869112 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | USA,Midwest |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 43.41/-106.28 |
| Address | USA,Midwest |
ECOSYSTEM
| Original Query | Homo sapiens,wound |
|---|---|
| Classification | host_associated,wound |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | mphA | copy | ||
| rgi | aadA2 | copy | ||
| amrfinderplus | pcoD | copy | ||
| rgi | Mrx | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | silF | copy | ||
| amrfinderplus | pcoS | copy | ||
| amrfinderplus | pcoR | copy | ||
| amrfinderplus | pcoA | copy | ||
| amrfinderplus | mph(A) | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 222 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000107__CP014778_00094 | IncFIB | 1 | 1011 | plus | 90.307 | 100 | 0 | 1325 |
| replicon | CP017721_00179 | rep_cluster_2183 | 140148 | 140975 | minus | 81.928 | 96 | 0 | 699 |
| replicon | 000132__HG969996 | IncFII | 141010 | 141244 | plus | 99.574 | 100 | 7.44e-118 | 429 |
| mate-pair-formation | NC_021502_00150 | MPF_T | 153619 | 155925 | minus | 97.792 | 100 | 0 | 1432 |
| relaxase | NC_021231_00058 | MOBF | 148358 | 153616 | minus | 98.175 | 100 | 0 | 3370 |
| relaxase | CP035180_00077 | MOBF | 153628 | 154380 | minus | 97.61 | 98 | 0 | 402 |
| mate-pair-formation | NC_019155_00032 | MPF_F | 157745 | 160588 | minus | 99.895 | 99 | 0 | 1853 |
| mate-pair-formation | NC_019165_00034 | MPF_F | 160591 | 161958 | minus | 99.781 | 100 | 0 | 842 |
| mate-pair-formation | NC_021654_00016 | MPF_F | 164758 | 166761 | minus | 100 | 100 | 0 | 1292 |
| mate-pair-formation | NC_019389_00080 | MPF_F | 166761 | 167396 | minus | 96.698 | 100 | 3.2499999999999997e-135 | 424 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 17 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |