Plasmid NZ_CP074538.1

Sequence

Nucleotide Information

Accession NZ_CP074538.1
Description Klebsiella pneumoniae strain S16_CRE16 plasmid pCRE16_3, complete sequence
Source refseq
Topology circular
Length 14879 bp
GC Content 0.54 %
Created at NCBI Jan. 12, 2023



Assembly

Genome Data Information

Accession GCF_027595645.1
Assembly Coverage 335


Biosample

Curated Collection Information
Accession 16387635

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 36.0075N;78.9384W
Original Query Type coordinates
Coordinates (Lat/Lon) 36.01/-78.94
Address Duke University Hospital, 2301, Erwin Road, Crest Street, Durham, Durham County, North Carolina, 27710, United States

ECOSYSTEM
Original Query Homo sapiens,tissue, L hip
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacterial infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OW969722.1 See Comparison
OW848988.1 See Comparison
CP067960.1 See Comparison
CP067943.1 See Comparison
CP067921.1 See Comparison
CP067895.1 See Comparison
CP067876.1 See Comparison
CP067800.1 See Comparison
CP067766.1 See Comparison
CP067757.1 See Comparison
CP067742.1 See Comparison
CP067683.1 See Comparison
CP067667.1 See Comparison
CP067643.1 See Comparison
CP067636.1 See Comparison
CP067620.1 See Comparison
CP067604.1 See Comparison
CP067596.1 See Comparison
CP067549.1 See Comparison
CP067499.1 See Comparison
CP067458.1 See Comparison
NZ_CP021837.1 See Comparison
CP021779.1 See Comparison
NZ_CP021543.1 See Comparison
NZ_CP021717.1 See Comparison
NZ_CP015384.1 See Comparison
NZ_CP018431.1 See Comparison
NZ_CP018433.1 See Comparison
NZ_CP018425.1 See Comparison
NZ_CP009778.1 See Comparison
NZ_CP007728.1 See Comparison
NZ_CP008828.1 See Comparison
NZ_CP009877.1 See Comparison
NC_021666.1 See Comparison
NC_019156.1 See Comparison
NZ_CP070082.1 See Comparison
NZ_CP135457.1 See Comparison
CP128735.1 See Comparison
NZ_CP098356.1 See Comparison
NZ_CP115704.1 See Comparison
NZ_CP074527.1 See Comparison
NZ_CP074538.1 See Comparison
NZ_CP074544.1 See Comparison
NZ_CP074560.1 See Comparison
CP067643.1 See Comparison
OW969722.1 See Comparison
OW848988.1 See Comparison
CP067960.1 See Comparison
CP067943.1 See Comparison
CP067921.1 See Comparison
CP067895.1 See Comparison
CP067876.1 See Comparison
CP067800.1 See Comparison
CP067766.1 See Comparison
CP067757.1 See Comparison
CP067742.1 See Comparison
CP067636.1 See Comparison
CP067620.1 See Comparison
CP067604.1 See Comparison
CP067458.1 See Comparison
CP067596.1 See Comparison
CP067683.1 See Comparison
CP067549.1 See Comparison
CP067667.1 See Comparison
CP067499.1 See Comparison
NZ_CP018433.1 See Comparison
CP021779.1 See Comparison
NZ_CP021543.1 See Comparison
NZ_CP021717.1 See Comparison
NZ_CP021837.1 See Comparison
NZ_CP015384.1 See Comparison
NZ_CP018425.1 See Comparison
NZ_CP018431.1 See Comparison
NZ_CP009778.1 See Comparison
NZ_CP007728.1 See Comparison
NC_021666.1 See Comparison
NZ_CP008828.1 See Comparison
NZ_CP009877.1 See Comparison
NZ_CP098356.1 See Comparison
NC_019156.1 See Comparison
NZ_CP135457.1 See Comparison
NZ_CP070082.1 See Comparison
NZ_CP115704.1 See Comparison
NZ_CP074527.1 See Comparison
NZ_CP074544.1 See Comparison
NZ_CP074560.1 See Comparison
CP128735.1 See Comparison
CP067766.1 See Comparison
OW969722.1 See Comparison
OW848988.1 See Comparison
CP067960.1 See Comparison
CP067943.1 See Comparison
CP067921.1 See Comparison
CP067895.1 See Comparison
CP067620.1 See Comparison
CP067757.1 See Comparison
CP067604.1 See Comparison
CP067876.1 See Comparison
CP067742.1 See Comparison
CP067596.1 See Comparison
CP067683.1 See Comparison
CP067549.1 See Comparison
CP067800.1 See Comparison
CP067667.1 See Comparison
CP067643.1 See Comparison
CP067499.1 See Comparison
CP067636.1 See Comparison
NZ_CP021717.1 See Comparison
CP067458.1 See Comparison
NZ_CP018431.1 See Comparison
NZ_CP021837.1 See Comparison
CP021779.1 See Comparison
NZ_CP021543.1 See Comparison
NZ_CP015384.1 See Comparison
NZ_CP018433.1 See Comparison
NZ_CP018425.1 See Comparison
NZ_CP009778.1 See Comparison
NZ_CP007728.1 See Comparison
NZ_CP008828.1 See Comparison
NZ_CP009877.1 See Comparison
NC_019156.1 See Comparison
NZ_CP135457.1 See Comparison
NC_021666.1 See Comparison
NZ_CP098356.1 See Comparison
NZ_CP070082.1 See Comparison
CP128735.1 See Comparison
NZ_CP115704.1 See Comparison
NZ_CP074527.1 See Comparison
NZ_CP074544.1 See Comparison
NZ_CP074560.1 See Comparison
CP067604.1 See Comparison
CP067766.1 See Comparison
CP067757.1 See Comparison
CP067742.1 See Comparison
OW969722.1 See Comparison
OW848988.1 See Comparison
CP067960.1 See Comparison
CP067943.1 See Comparison
CP067921.1 See Comparison
CP067895.1 See Comparison
CP067876.1 See Comparison
CP067596.1 See Comparison
CP067549.1 See Comparison
CP067800.1 See Comparison
CP067683.1 See Comparison
CP067499.1 See Comparison
CP067667.1 See Comparison
CP067643.1 See Comparison
CP067636.1 See Comparison
CP067458.1 See Comparison
CP067620.1 See Comparison
NZ_CP018431.1 See Comparison
NZ_CP021837.1 See Comparison
CP021779.1 See Comparison
NZ_CP021543.1 See Comparison
NZ_CP021717.1 See Comparison
NZ_CP015384.1 See Comparison
NZ_CP018433.1 See Comparison
NZ_CP018425.1 See Comparison
NC_021666.1 See Comparison
NC_019156.1 See Comparison
NZ_CP009778.1 See Comparison
NZ_CP007728.1 See Comparison
NZ_CP008828.1 See Comparison
NZ_CP009877.1 See Comparison
NZ_CP135457.1 See Comparison
NZ_CP070082.1 See Comparison
CP128735.1 See Comparison
NZ_CP098356.1 See Comparison
NZ_CP115704.1 See Comparison
NZ_CP074527.1 See Comparison
NZ_CP074544.1 See Comparison
NZ_CP074560.1 See Comparison
CP067596.1 See Comparison
CP067757.1 See Comparison
CP067742.1 See Comparison
OW969722.1 See Comparison
OW848988.1 See Comparison
CP067960.1 See Comparison
CP067943.1 See Comparison
CP067921.1 See Comparison
CP067895.1 See Comparison
CP067876.1 See Comparison
CP067549.1 See Comparison
CP067499.1 See Comparison
CP067800.1 See Comparison
CP067766.1 See Comparison
CP067683.1 See Comparison
CP067667.1 See Comparison
CP067458.1 See Comparison
CP067643.1 See Comparison
CP067636.1 See Comparison
CP067620.1 See Comparison
NZ_CP009778.1 See Comparison
CP067604.1 See Comparison
NZ_CP021837.1 See Comparison
CP021779.1 See Comparison
NZ_CP021543.1 See Comparison
NZ_CP021717.1 See Comparison
NZ_CP018431.1 See Comparison
NZ_CP018433.1 See Comparison
NZ_CP018425.1 See Comparison
NZ_CP007728.1 See Comparison
NZ_CP008828.1 See Comparison
NZ_CP009877.1 See Comparison
NZ_CP015384.1 See Comparison
NC_019156.1 See Comparison
NZ_CP098356.1 See Comparison
NC_021666.1 See Comparison
NZ_CP070082.1 See Comparison
NZ_CP115704.1 See Comparison
NZ_CP074527.1 See Comparison
NZ_CP074544.1 See Comparison
NZ_CP074560.1 See Comparison
NZ_CP135457.1 See Comparison
CP128735.1 See Comparison
CP067742.1 See Comparison
OW969722.1 See Comparison
OW848988.1 See Comparison
CP067960.1 See Comparison
CP067943.1 See Comparison
CP067683.1 See Comparison
CP067921.1 See Comparison
CP067895.1 See Comparison
CP067876.1 See Comparison
CP067667.1 See Comparison
CP067643.1 See Comparison
CP067800.1 See Comparison
CP067636.1 See Comparison
CP067766.1 See Comparison
CP067549.1 See Comparison
CP067620.1 See Comparison
CP067757.1 See Comparison
CP067604.1 See Comparison
CP067596.1 See Comparison
CP067499.1 See Comparison
NZ_CP015384.1 See Comparison
CP067458.1 See Comparison
NZ_CP021837.1 See Comparison
CP021779.1 See Comparison
NZ_CP021543.1 See Comparison
NZ_CP021717.1 See Comparison
NC_021666.1 See Comparison
NZ_CP009778.1 See Comparison
NZ_CP007728.1 See Comparison
NC_019156.1 See Comparison
NZ_CP018431.1 See Comparison
NZ_CP018433.1 See Comparison
NZ_CP018425.1 See Comparison
NZ_CP008828.1 See Comparison
NZ_CP009877.1 See Comparison
NZ_CP135457.1 See Comparison
CP128735.1 See Comparison
NZ_CP115704.1 See Comparison
NZ_CP074560.1 See Comparison
NZ_CP070082.1 See Comparison
NZ_CP074527.1 See Comparison
NZ_CP074544.1 See Comparison
NZ_CP098356.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore