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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP070919.1
Sequence
Nucleotide Information
Accession
NZ_CP070919.1
Description
Escherichia coli strain 65COLEC plasmid p65COLEC-5
Source
refseq
Topology
linear
Length
1551 bp
GC Content
0.52 %
Created at NCBI
March 5, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_017088465.1
Assembly Coverage
363
Biosample
Curated Collection Information
Accession
17807535
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Singapore
Original Query Type
name
Coordinates (Lat/Lon)
1.34/103.88
Address
Singapore
ECOSYSTEM
Original Query
Homo sapiens,Bacterial pure culture,feces
Classification
cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP070918.1
NZ_CP070917.1
NZ_CP070916.1
NZ_CP070915.1
Similar Plasmids
based on Mash distance
NZ_CP024465.1
See Comparison
NZ_AP027253.1
See Comparison
NZ_AP027618.1
See Comparison
CP056927.1
See Comparison
NZ_CP115830.1
See Comparison
NZ_CP142052.1
See Comparison
NZ_CP057242.1
See Comparison
CP057777.1
See Comparison
CP057664.1
See Comparison
CP057656.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
NZ_CP070919.1
See Comparison
CP058086.1
See Comparison
CP058099.1
See Comparison
CP058110.1
See Comparison
NZ_CP057683.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_AP027618.1
See Comparison
NZ_CP103767.1
See Comparison
NZ_CP069699.1
See Comparison
NZ_CP024465.1
See Comparison
NZ_AP027253.1
See Comparison
CP058086.1
See Comparison
NZ_CP115830.1
See Comparison
CP057777.1
See Comparison
CP057664.1
See Comparison
CP057656.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
CP056927.1
See Comparison
NZ_CP142052.1
See Comparison
CP058099.1
See Comparison
CP058110.1
See Comparison
NZ_CP057683.1
See Comparison
NZ_CP115830.1
See Comparison
NZ_CP057242.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_CP024465.1
See Comparison
NZ_CP142052.1
See Comparison
NZ_CP103767.1
See Comparison
NZ_CP069699.1
See Comparison
NZ_AP027253.1
See Comparison
NZ_AP027618.1
See Comparison
CP057777.1
See Comparison
CP057664.1
See Comparison
CP057656.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
CP056927.1
See Comparison
NZ_CP057242.1
See Comparison
CP058086.1
See Comparison
CP058099.1
See Comparison
CP058110.1
See Comparison
NZ_CP057683.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_CP069699.1
See Comparison
NZ_CP103767.1
See Comparison
NZ_AP027253.1
See Comparison
NZ_CP024465.1
See Comparison
CP057777.1
See Comparison
NZ_CP142052.1
See Comparison
NZ_AP027618.1
See Comparison
NZ_CP115830.1
See Comparison
CP057664.1
See Comparison
CP057656.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
CP056927.1
See Comparison
CP058086.1
See Comparison
CP058099.1
See Comparison
CP058110.1
See Comparison
NZ_CP057683.1
See Comparison
NZ_CP103767.1
See Comparison
NZ_CP057242.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_CP069699.1
See Comparison
NZ_AP027253.1
See Comparison
NZ_CP024465.1
See Comparison
NZ_CP115830.1
See Comparison
NZ_AP027618.1
See Comparison
NZ_CP142052.1
See Comparison
CP057664.1
See Comparison
CP057656.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
CP056927.1
See Comparison
NZ_CP057242.1
See Comparison
CP057777.1
See Comparison
CP058086.1
See Comparison
CP058099.1
See Comparison
CP058110.1
See Comparison
NZ_CP057683.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_AP027253.1
See Comparison
NZ_CP103767.1
See Comparison
NZ_CP069699.1
See Comparison
NZ_CP024465.1
See Comparison
NZ_AP027618.1
See Comparison
NZ_CP142052.1
See Comparison
CP057664.1
See Comparison
NZ_CP115830.1
See Comparison
CP057656.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
CP056927.1
See Comparison
CP057777.1
See Comparison
CP058086.1
See Comparison
CP058099.1
See Comparison
CP058110.1
See Comparison
NZ_CP057683.1
See Comparison
NZ_CP103767.1
See Comparison
NZ_CP057242.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_CP069699.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP057683.1
Sequence
Accession
:
NZ_CP057683.1
Description
: Escherichia fergusonii strain RHB18-C04 plasmid pRHB18-C04_3, complete sequence
Source
: refseq
Created at NCBI
: Aug. 5, 2020
Host Taxonomy
Assigned Host
:
Escherichia fergusonii (564)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_fergusonii (564)
Strain
:
Biosample
Accession
:
15148152
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled sheep faecal samples collected from floor of farm
Classification
: anthropogenic,cell_culture,farm,soil
Host-associated Taxon
:
Visualization
PNG
JSON
CP056927.1
Sequence
Accession
:
CP056927.1
Description
: Escherichia coli strain RHB42-C22 plasmid pRHB42-C22_7, complete sequence
Source
: insd
Created at NCBI
: July 28, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
15148440
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled sheep faecal samples collected from floor of farm
Classification
: anthropogenic,cell_culture,farm,soil
Host-associated Taxon
:
Visualization
PNG
JSON
CP057356.1
Sequence
Accession
:
CP057356.1
Description
: Escherichia coli strain RHB29-C05 plasmid pRHB29-C05_3, complete sequence
Source
: insd
Created at NCBI
: July 28, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
15148276
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled sheep faecal samples collected from floor of farm
Classification
: anthropogenic,cell_culture,farm,soil
Host-associated Taxon
:
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore