Plasmid CP058099.1

Sequence

Nucleotide Information

Accession	CP058099.1
Description	Escherichia coli strain RHB01-C09 plasmid pRHB01-C09_7, complete sequence
Source	insd
Topology	circular
Length	1551 bp
GC Content	0.52 %
Created at NCBI	Aug. 7, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCA_014109645.1
Assembly Coverage	90.9454

Biosample

Curated Collection Information

Accession	15147953

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	United Kingdom
Original Query Type	name
Coordinates (Lat/Lon)	54.70/-3.28
Address	United Kingdom

ECOSYSTEM

Original Query	culture,Pooled sheep faecal samples collected from floor of farm
Classification	anthropogenic,cell_culture,farm,soil
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP024465.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_AP027253.1	See Comparison
NZ_AP027618.1	See Comparison
NZ_CP142052.1	See Comparison
NZ_CP115830.1	See Comparison
CP057777.1	See Comparison
CP057664.1	See Comparison
CP057656.1	See Comparison
CP057649.1	See Comparison
CP057499.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
CP056927.1	See Comparison
NZ_CP070919.1	See Comparison
NZ_CP069699.1	See Comparison
NZ_CP057242.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison
CP058086.1	See Comparison
CP058110.1	See Comparison
NZ_CP057683.1	See Comparison
NZ_CP103767.1	See Comparison
NZ_AP027253.1	See Comparison
NZ_CP024465.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_CP142052.1	See Comparison
NZ_AP027618.1	See Comparison
CP057777.1	See Comparison
NZ_CP115830.1	See Comparison
CP057664.1	See Comparison
CP057656.1	See Comparison
CP057649.1	See Comparison
CP057499.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
CP058086.1	See Comparison
CP056927.1	See Comparison
NZ_CP070919.1	See Comparison
CP058110.1	See Comparison
NZ_CP057683.1	See Comparison
NZ_AP027618.1	See Comparison
NZ_CP057242.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison
NZ_CP103767.1	See Comparison
NZ_CP069699.1	See Comparison
NZ_CP024465.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_AP027253.1	See Comparison
CP058086.1	See Comparison
NZ_CP115830.1	See Comparison
CP057649.1	See Comparison
CP057499.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
CP056927.1	See Comparison
NZ_CP142052.1	See Comparison
CP057777.1	See Comparison
CP057664.1	See Comparison
CP057656.1	See Comparison
NZ_CP070919.1	See Comparison
NZ_CP057683.1	See Comparison
CP058110.1	See Comparison
NZ_CP024465.1	See Comparison
NZ_CP103767.1	See Comparison
NZ_CP057242.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison
NZ_CP069699.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_AP027618.1	See Comparison
NZ_AP027253.1	See Comparison
CP057777.1	See Comparison
NZ_CP142052.1	See Comparison
NZ_CP115830.1	See Comparison
CP057499.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
CP057664.1	See Comparison
CP057656.1	See Comparison
CP057649.1	See Comparison
NZ_CP057242.1	See Comparison
CP056927.1	See Comparison
NZ_CP070919.1	See Comparison
CP058086.1	See Comparison
CP058110.1	See Comparison
NZ_CP057683.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_CP069699.1	See Comparison
NZ_CP024465.1	See Comparison
NZ_CP103767.1	See Comparison
NZ_AP027253.1	See Comparison
NZ_CP115830.1	See Comparison
NZ_AP027618.1	See Comparison
NZ_CP142052.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
CP056927.1	See Comparison
CP057777.1	See Comparison
CP058086.1	See Comparison
CP057664.1	See Comparison
CP057656.1	See Comparison
CP057649.1	See Comparison
CP057499.1	See Comparison
NZ_CP070919.1	See Comparison
CP058110.1	See Comparison
NZ_CP057683.1	See Comparison
NZ_CP024465.1	See Comparison
NZ_CP069699.1	See Comparison
NZ_CP057242.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison
NZ_CP103767.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_AP027253.1	See Comparison
NZ_AP027618.1	See Comparison
CP056927.1	See Comparison
NZ_CP142052.1	See Comparison
NZ_CP115830.1	See Comparison
NZ_CP057242.1	See Comparison
CP057777.1	See Comparison
CP057664.1	See Comparison
CP057656.1	See Comparison
CP057649.1	See Comparison
CP057499.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
NZ_CP070919.1	See Comparison
CP058086.1	See Comparison
CP058099.1	See Comparison
CP058110.1	See Comparison
NZ_CP057683.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison
NZ_CP069699.1	See Comparison
NZ_CP103767.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore