Plasmid NZ_CP069699.1

Sequence

Nucleotide Information

Accession	NZ_CP069699.1
Description	Escherichia coli H20 strain MIN6 plasmid pMUB-MIN6-6, complete sequence
Source	refseq
Topology	circular
Length	1551 bp
GC Content	0.52 %
Created at NCBI	March 26, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (2810409)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_017570685.1
Assembly Coverage	446

Biosample

Curated Collection Information

Accession	17831481

PLASMID INFORMATION

Genotype	ST-553

GEOGRAPHICAL INFORMATION

Original Query	53.12523570N;23.15905989E
Original Query Type	coordinates
Coordinates (Lat/Lon)	53.13/23.16
Address	Uniwersytecki Szpital Kliniczny, 24A, Marii Skłodowskiej-Curie, Osiedle Skłodowskiej, Piaski, Białystok, Podlaskie Voivodeship, 15-276, Poland

ECOSYSTEM

Original Query	Homo sapiens
Classification	host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP103767.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_CP024465.1	See Comparison
NZ_CP142052.1	See Comparison
NZ_AP027253.1	See Comparison
NZ_AP027618.1	See Comparison
CP058086.1	See Comparison
NZ_CP115830.1	See Comparison
CP057777.1	See Comparison
CP057664.1	See Comparison
CP057656.1	See Comparison
CP057649.1	See Comparison
CP057499.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
CP056927.1	See Comparison
NZ_CP070919.1	See Comparison
CP058099.1	See Comparison
CP058110.1	See Comparison
NZ_CP057683.1	See Comparison
NZ_AP027253.1	See Comparison
NZ_CP057242.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison
NZ_CP103767.1	See Comparison
NZ_CP024465.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_CP115830.1	See Comparison
NZ_CP142052.1	See Comparison
NZ_AP027618.1	See Comparison
CP057777.1	See Comparison
CP057664.1	See Comparison
CP057656.1	See Comparison
CP057649.1	See Comparison
CP057499.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
CP056927.1	See Comparison
CP058086.1	See Comparison
NZ_CP070919.1	See Comparison
CP058099.1	See Comparison
CP058110.1	See Comparison
NZ_CP057683.1	See Comparison
NZ_CP103767.1	See Comparison
NZ_CP057242.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison
NZ_AP027253.1	See Comparison
NZ_CP024465.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_AP027618.1	See Comparison
NZ_CP115830.1	See Comparison
NZ_CP142052.1	See Comparison
CP057664.1	See Comparison
CP057656.1	See Comparison
CP057649.1	See Comparison
CP057499.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
CP056927.1	See Comparison
CP057777.1	See Comparison
NZ_CP103767.1	See Comparison
NZ_CP070919.1	See Comparison
CP058086.1	See Comparison
CP058099.1	See Comparison
CP058110.1	See Comparison
NZ_CP057683.1	See Comparison
NZ_CP057242.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison
NZ_CP024465.1	See Comparison
NZ_CP069699.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_AP027618.1	See Comparison
NZ_AP027253.1	See Comparison
CP058086.1	See Comparison
NZ_CP115830.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
CP056927.1	See Comparison
NZ_CP070919.1	See Comparison
NZ_CP142052.1	See Comparison
CP057777.1	See Comparison
CP057664.1	See Comparison
CP057656.1	See Comparison
CP057649.1	See Comparison
CP057499.1	See Comparison
CP058099.1	See Comparison
CP058110.1	See Comparison
NZ_CP057683.1	See Comparison
NZ_CP142052.1	See Comparison
NZ_CP057242.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison
NZ_CP103767.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_CP024465.1	See Comparison
NZ_AP027253.1	See Comparison
NZ_AP027618.1	See Comparison
CP057777.1	See Comparison
NZ_CP115830.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
CP057664.1	See Comparison
CP056927.1	See Comparison
CP057656.1	See Comparison
CP057649.1	See Comparison
CP057499.1	See Comparison
CP058086.1	See Comparison
NZ_CP070919.1	See Comparison
CP058099.1	See Comparison
CP058110.1	See Comparison
NZ_CP057683.1	See Comparison
NZ_CP103767.1	See Comparison
NZ_CP057242.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison
NZ_CP135708.1	See Comparison
NZ_CP024465.1	See Comparison
NZ_AP027253.1	See Comparison
NZ_AP027618.1	See Comparison
NZ_CP070919.1	See Comparison
NZ_CP115830.1	See Comparison
CP056927.1	See Comparison
NZ_CP142052.1	See Comparison
CP057777.1	See Comparison
CP057664.1	See Comparison
CP057656.1	See Comparison
CP057649.1	See Comparison
CP057499.1	See Comparison
CP057356.1	See Comparison
CP057352.1	See Comparison
CP057339.1	See Comparison
CP057189.1	See Comparison
CP058086.1	See Comparison
CP058099.1	See Comparison
CP058110.1	See Comparison
NZ_CP057683.1	See Comparison
NZ_CP057242.1	See Comparison
NZ_CP057233.1	See Comparison
NZ_CP057222.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP115830.1

Sequence

Accession: NZ_CP115830.1
Description: Escherichia coli strain E1 plasmid pE1-Col3, complete sequence
Source: refseq
Created at NCBI: Jan. 7, 2024

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 32542048

GEOGRAPHICAL INFORMATION

Original Query: China
Original Query Type: name
Address: China
Coordinates (Lat/Lon): 34.41/86.03

ECOSYSTEM

Original Query: Homo sapiens,cell culture
Classification: cell_culture,host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

CP058099.1

Sequence

Accession: CP058099.1
Description: Escherichia coli strain RHB01-C09 plasmid pRHB01-C09_7, complete sequence
Source: insd
Created at NCBI: Aug. 7, 2020

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15147953

GEOGRAPHICAL INFORMATION

Original Query: United Kingdom
Original Query Type: name
Address: United Kingdom
Coordinates (Lat/Lon): 54.70/-3.28

ECOSYSTEM

Original Query: culture,Pooled sheep faecal samples collected from floor of farm
Classification: anthropogenic,cell_culture,farm,soil
Host-associated Taxon:

Visualization

CP058110.1

Sequence

Accession: CP058110.1
Description: Escherichia coli strain RHB01-C04 plasmid pRHB01-C04_7, complete sequence
Source: insd
Created at NCBI: Aug. 7, 2020

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15147948

GEOGRAPHICAL INFORMATION

Original Query: United Kingdom
Original Query Type: name
Address: United Kingdom
Coordinates (Lat/Lon): 54.70/-3.28

ECOSYSTEM

Original Query: culture,Pooled sheep faecal samples collected from floor of farm
Classification: anthropogenic,cell_culture,farm,soil
Host-associated Taxon:

Visualization

CP057777.1

Sequence

Accession: CP057777.1
Description: Escherichia coli strain RHB15-C22 plasmid pRHB15-C22_5, complete sequence
Source: insd
Created at NCBI: July 29, 2020

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15148126

GEOGRAPHICAL INFORMATION

Original Query: United Kingdom
Original Query Type: name
Address: United Kingdom
Coordinates (Lat/Lon): 54.70/-3.28

ECOSYSTEM

Original Query: culture,Pooled sheep faecal samples collected from floor of farm
Classification: anthropogenic,cell_culture,farm,soil
Host-associated Taxon:

Visualization

CP057649.1

Sequence

Accession: CP057649.1
Description: Escherichia coli strain RHB19-C13 plasmid pRHB19-C13_5, complete sequence
Source: insd
Created at NCBI: July 29, 2020

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15148168

GEOGRAPHICAL INFORMATION

Original Query: United Kingdom
Original Query Type: name
Address: United Kingdom
Coordinates (Lat/Lon): 54.70/-3.28

ECOSYSTEM

Original Query: culture,Pooled sheep faecal samples collected from floor of farm
Classification: anthropogenic,cell_culture,farm,soil
Host-associated Taxon:

Visualization

CP057352.1

Sequence

Accession: CP057352.1
Description: Escherichia coli strain RHB29-C08 plasmid pRHB29-C08_4, complete sequence
Source: insd
Created at NCBI: July 28, 2020

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15148278

GEOGRAPHICAL INFORMATION

Original Query: United Kingdom
Original Query Type: name
Address: United Kingdom
Coordinates (Lat/Lon): 54.70/-3.28

ECOSYSTEM

Original Query: culture,Pooled sheep faecal samples collected from floor of farm
Classification: anthropogenic,cell_culture,farm,soil
Host-associated Taxon:

Visualization

CP057499.1

Sequence

Accession: CP057499.1
Description: Escherichia coli strain RHB24-C10 plasmid pRHB24-C10_7, complete sequence
Source: insd
Created at NCBI: July 28, 2020

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15148227

GEOGRAPHICAL INFORMATION

Original Query: United Kingdom
Original Query Type: name
Address: United Kingdom
Coordinates (Lat/Lon): 54.70/-3.28

ECOSYSTEM

Original Query: culture,Pooled sheep faecal samples collected from floor of farm
Classification: anthropogenic,cell_culture,farm,soil
Host-associated Taxon:

Visualization

CP057339.1

Sequence

Accession: CP057339.1
Description: Escherichia coli strain RHB29-C22 plasmid pRHB29-C22_4, complete sequence
Source: insd
Created at NCBI: July 28, 2020

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15148284

GEOGRAPHICAL INFORMATION

Original Query: United Kingdom
Original Query Type: name
Address: United Kingdom
Coordinates (Lat/Lon): 54.70/-3.28

ECOSYSTEM

Original Query: culture,Pooled sheep faecal samples collected from floor of farm
Classification: anthropogenic,cell_culture,farm,soil
Host-associated Taxon:

Visualization

CP057189.1

Sequence

Accession: CP057189.1
Description: Escherichia coli strain RHB33-C19 plasmid pRHB33-C19_2, complete sequence
Source: insd
Created at NCBI: July 28, 2020

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15148334

GEOGRAPHICAL INFORMATION

Original Query: United Kingdom
Original Query Type: name
Address: United Kingdom
Coordinates (Lat/Lon): 54.70/-3.28

ECOSYSTEM

Original Query: culture,Pooled sheep faecal samples collected from floor of farm
Classification: anthropogenic,cell_culture,farm,soil
Host-associated Taxon:

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore