Plasmid NZ_CP057233.1

Sequence

Nucleotide Information

Accession NZ_CP057233.1
Description Escherichia fergusonii strain RHB32-C16 plasmid pRHB32-C16_5, complete sequence
Source refseq
Topology circular
Length 1551 bp
GC Content 0.52 %
Created at NCBI Aug. 4, 2020



Assembly

Genome Data Information

Accession GCF_013820225.1
Assembly Coverage 164.841


Biosample

Curated Collection Information
Accession 15148320

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled sheep faecal samples collected from floor of farm
Classification anthropogenic,cell_culture,farm,soil
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP069699.1 See Comparison
NZ_CP115830.1 See Comparison
NZ_AP027618.1 See Comparison
NZ_CP024465.1 See Comparison
NZ_AP027253.1 See Comparison
NZ_CP057242.1 See Comparison
CP057356.1 See Comparison
CP057352.1 See Comparison
CP057339.1 See Comparison
CP057189.1 See Comparison
CP056927.1 See Comparison
CP058099.1 See Comparison
CP058110.1 See Comparison
NZ_CP057683.1 See Comparison
CP057777.1 See Comparison
CP057664.1 See Comparison
CP057656.1 See Comparison
CP057649.1 See Comparison
CP057499.1 See Comparison
NZ_CP070919.1 See Comparison
NZ_CP057222.1 See Comparison
NZ_CP069699.1 See Comparison
NZ_CP115830.1 See Comparison
NZ_CP024465.1 See Comparison
NZ_AP027253.1 See Comparison
NZ_AP027618.1 See Comparison
CP057777.1 See Comparison
CP056927.1 See Comparison
CP057664.1 See Comparison
CP057656.1 See Comparison
CP057649.1 See Comparison
CP057499.1 See Comparison
CP057356.1 See Comparison
CP057352.1 See Comparison
CP057339.1 See Comparison
CP057189.1 See Comparison
NZ_CP070919.1 See Comparison
CP058099.1 See Comparison
CP058110.1 See Comparison
NZ_CP057683.1 See Comparison
NZ_CP069699.1 See Comparison
NZ_CP057242.1 See Comparison
NZ_CP057233.1 See Comparison
NZ_CP057222.1 See Comparison
NZ_CP024465.1 See Comparison
NZ_CP024465.1 See Comparison
NZ_AP027253.1 See Comparison
NZ_CP115830.1 See Comparison
CP057777.1 See Comparison
CP057664.1 See Comparison
CP057656.1 See Comparison
CP057649.1 See Comparison
CP057499.1 See Comparison
CP057356.1 See Comparison
CP057352.1 See Comparison
CP057339.1 See Comparison
CP057189.1 See Comparison
CP056927.1 See Comparison
NZ_CP070919.1 See Comparison
NZ_CP057242.1 See Comparison
NZ_CP057222.1 See Comparison
NZ_AP027618.1 See Comparison
CP058099.1 See Comparison
CP058110.1 See Comparison
NZ_CP057683.1 See Comparison
NZ_CP069699.1 See Comparison
CP057777.1 See Comparison
NZ_AP027253.1 See Comparison
NZ_CP115830.1 See Comparison
NZ_AP027618.1 See Comparison
CP057664.1 See Comparison
CP057656.1 See Comparison
CP057649.1 See Comparison
CP057499.1 See Comparison
CP057356.1 See Comparison
CP057352.1 See Comparison
CP057339.1 See Comparison
CP057189.1 See Comparison
CP056927.1 See Comparison
NZ_CP070919.1 See Comparison
CP058099.1 See Comparison
CP058110.1 See Comparison
NZ_CP057683.1 See Comparison
NZ_CP057242.1 See Comparison
NZ_CP057222.1 See Comparison
NZ_CP069699.1 See Comparison
NZ_CP070919.1 See Comparison
NZ_CP024465.1 See Comparison
NZ_AP027253.1 See Comparison
NZ_CP115830.1 See Comparison
CP057777.1 See Comparison
CP057664.1 See Comparison
CP057656.1 See Comparison
CP057649.1 See Comparison
CP057499.1 See Comparison
CP057356.1 See Comparison
CP057352.1 See Comparison
CP057339.1 See Comparison
CP057189.1 See Comparison
CP056927.1 See Comparison
NZ_AP027618.1 See Comparison
NZ_CP024465.1 See Comparison
NZ_CP057242.1 See Comparison
NZ_CP057222.1 See Comparison
CP058099.1 See Comparison
CP058110.1 See Comparison
NZ_CP057683.1 See Comparison
NZ_CP069699.1 See Comparison
CP057777.1 See Comparison
NZ_AP027618.1 See Comparison
CP057664.1 See Comparison
CP057656.1 See Comparison
CP057649.1 See Comparison
CP057499.1 See Comparison
CP057356.1 See Comparison
CP057352.1 See Comparison
CP057339.1 See Comparison
CP057189.1 See Comparison
CP056927.1 See Comparison
NZ_AP027253.1 See Comparison
NZ_CP115830.1 See Comparison
NZ_CP057242.1 See Comparison
NZ_CP070919.1 See Comparison
CP058099.1 See Comparison
CP058110.1 See Comparison
NZ_CP057683.1 See Comparison
NZ_CP057222.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore