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v. 2024_05_31_v2
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Typing
Plasmid NZ_AP027253.1
Sequence
Nucleotide Information
Accession
NZ_AP027253.1
Description
Escherichia coli strain JNE120393 plasmid pJNE120393-7, complete sequence
Source
refseq
Topology
circular
Length
1551 bp
GC Content
0.52 %
Created at NCBI
June 24, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_030295585.1
Assembly Coverage
157.4
Biosample
Curated Collection Information
Accession
35534939
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Japan
Original Query Type
name
Coordinates (Lat/Lon)
36.57/139.24
Address
Japan
ECOSYSTEM
Original Query
Homo sapiens
Classification
host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_AP027252.1
NZ_AP027251.1
NZ_AP027250.1
NZ_AP027249.1
NZ_AP027248.1
NZ_AP027247.1
Similar Plasmids
based on Mash distance
NZ_CP115830.1
See Comparison
CP057777.1
See Comparison
CP057664.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
CP056927.1
See Comparison
NZ_CP115830.1
See Comparison
NZ_CP070919.1
See Comparison
NZ_CP057242.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_CP056919.1
See Comparison
NZ_CP056939.1
See Comparison
NZ_CP056954.1
See Comparison
NZ_CP069699.1
See Comparison
CP058099.1
See Comparison
CP058110.1
See Comparison
NZ_CP057921.1
See Comparison
NZ_CP057899.1
See Comparison
NZ_CP057683.1
See Comparison
NZ_CP069699.1
See Comparison
NZ_CP057242.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_CP056919.1
See Comparison
NZ_CP056939.1
See Comparison
NZ_CP056954.1
See Comparison
CP057777.1
See Comparison
CP057664.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
CP056927.1
See Comparison
NZ_CP070919.1
See Comparison
CP058099.1
See Comparison
CP058110.1
See Comparison
NZ_CP057921.1
See Comparison
NZ_CP057899.1
See Comparison
NZ_CP057683.1
See Comparison
CP058099.1
See Comparison
NZ_CP115830.1
See Comparison
CP057777.1
See Comparison
CP057664.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
CP056927.1
See Comparison
NZ_CP070919.1
See Comparison
CP058110.1
See Comparison
NZ_CP057921.1
See Comparison
NZ_CP057899.1
See Comparison
NZ_CP057683.1
See Comparison
NZ_CP115830.1
See Comparison
NZ_CP057242.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_CP056919.1
See Comparison
NZ_CP056939.1
See Comparison
NZ_CP056954.1
See Comparison
NZ_CP069699.1
See Comparison
CP057777.1
See Comparison
CP057664.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
CP056927.1
See Comparison
NZ_CP070919.1
See Comparison
NZ_CP057242.1
See Comparison
CP058099.1
See Comparison
CP058110.1
See Comparison
NZ_CP057921.1
See Comparison
NZ_CP057899.1
See Comparison
NZ_CP057683.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_CP056919.1
See Comparison
NZ_CP056939.1
See Comparison
NZ_CP056954.1
See Comparison
NZ_CP069699.1
See Comparison
CP057777.1
See Comparison
NZ_AP027253.1
See Comparison
NZ_CP115830.1
See Comparison
CP057664.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
CP056927.1
See Comparison
CP058099.1
See Comparison
NZ_CP070919.1
See Comparison
CP058110.1
See Comparison
NZ_CP057921.1
See Comparison
NZ_CP057899.1
See Comparison
NZ_CP057683.1
See Comparison
CP058099.1
See Comparison
NZ_CP057242.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_CP056919.1
See Comparison
NZ_CP056939.1
See Comparison
NZ_CP056954.1
See Comparison
NZ_CP069699.1
See Comparison
NZ_CP115830.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
CP056927.1
See Comparison
NZ_CP070919.1
See Comparison
CP057777.1
See Comparison
CP057664.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP058110.1
See Comparison
NZ_CP057921.1
See Comparison
NZ_CP057899.1
See Comparison
NZ_CP057683.1
See Comparison
CP057777.1
See Comparison
NZ_CP057242.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_CP056919.1
See Comparison
NZ_CP056939.1
See Comparison
NZ_CP056954.1
See Comparison
NZ_CP069699.1
See Comparison
NZ_CP115830.1
See Comparison
CP056927.1
See Comparison
CP057664.1
See Comparison
CP057649.1
See Comparison
CP057499.1
See Comparison
CP057356.1
See Comparison
CP057352.1
See Comparison
CP057339.1
See Comparison
CP057189.1
See Comparison
NZ_CP070919.1
See Comparison
CP058099.1
See Comparison
CP058110.1
See Comparison
NZ_CP057921.1
See Comparison
NZ_CP057899.1
See Comparison
NZ_CP057683.1
See Comparison
NZ_CP057242.1
See Comparison
NZ_CP057233.1
See Comparison
NZ_CP057222.1
See Comparison
NZ_CP056919.1
See Comparison
NZ_CP056939.1
See Comparison
NZ_CP056954.1
See Comparison
NZ_CP069699.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP057222.1
Sequence
Accession
:
NZ_CP057222.1
Description
: Escherichia fergusonii strain RHB32-C22 plasmid pRHB32-C22_3, complete sequence
Source
: refseq
Created at NCBI
: Aug. 4, 2020
Host Taxonomy
Assigned Host
:
Escherichia fergusonii (564)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_fergusonii (564)
Strain
:
Biosample
Accession
:
15148324
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled sheep faecal samples collected from floor of farm
Classification
: anthropogenic,cell_culture,farm,soil
Host-associated Taxon
:
Visualization
PNG
JSON
CP057664.1
Sequence
Accession
:
CP057664.1
Description
: Escherichia coli strain RHB18-C23 plasmid pRHB18-C23_5, complete sequence
Source
: insd
Created at NCBI
: July 29, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
15148161
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled sheep faecal samples collected from floor of farm
Classification
: anthropogenic,cell_culture,farm,soil
Host-associated Taxon
:
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
Detected typing markers by plasmidfinder
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2