Plasmid NZ_CP052763.1
Sequence
Nucleotide Information
| Accession | NZ_CP052763.1 |
|---|---|
| Description | Klebsiella pneumoniae strain XH210 plasmid pXH210_2, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 52578 bp |
| GC Content | 0.51 % |
| Created at NCBI | April 28, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 3252408 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 30.256769N;120.201838E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 30.26/120.20 |
| Address | Hanghai Road, 钱杭社区, Sijiqing, Shangcheng District, Hangzhou City, Zhejiang, 310026, China |
ECOSYSTEM
| Original Query | Homo sapiens,blood from patient with pneumonia |
|---|---|
| Classification | blood,circulatory_system,disease,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | Pneumonia due to Klebsiella pneumoniae |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
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100
Hex
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | qnrS1 | copy | ||
| amrfinderplus | blaIMP-4 | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | recombinase family protein | copy | ||
| PGAG | IS6-like element IS26 family transposase | copy | ||
| PGAG | subclass B1 metallo-beta-lactamase IMP-4 | copy | ||
| PGAG | ltrA | copy | ||
| PGAG | IS6-like element IS6100 family transposase | copy | ||
| PGAG | type II site-specific deoxyribonuclease | copy | ||
| PGAG | DNA cytosine methyltransferase | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 67 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_015599_00019 | MOBF | 34137 | 37313 | minus | 99.622 | 98 | 0 | 2030 |
| mate-pair-formation | NC_009131_00030 | MPF_T | 16689 | 17003 | plus | 100 | 100 | 6.62e-63 | 212 |
| mate-pair-formation | NC_011617_00041 | MPF_T | 17006 | 19603 | plus | 100 | 100 | 0 | 1811 |
| mate-pair-formation | NC_014368_00014 | MPF_T | 20588 | 21625 | plus | 99.422 | 100 | 3.38e-180 | 560 |
| mate-pair-formation | NC_007682_00044 | MPF_T | 21847 | 22542 | plus | 100 | 100 | 1e-154 | 481 |
| mate-pair-formation | NC_008612_00190 | MPF_T | 22556 | 23437 | plus | 100 | 100 | 1.2e-176 | 547 |
| mate-pair-formation | NC_022375_00024 | MPF_T | 37316 | 38842 | minus | 99.804 | 100 | 0 | 996 |
| oriT | NZ_CP016498 | MOBF | 39322 | 39589 | minus | 100 | 100 | 8.36e-138 | 496 |
| replicon | 000153__NC_019087_00001 | IncN | 1 | 720 | plus | 99.583 | 100 | 0 | 1314 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 9 of 9 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |