Plasmid CP090255.1

Sequence

Nucleotide Information

Accession CP090255.1
Description Escherichia coli strain E305-2 plasmid pE305-2-IMP-4, complete sequence
Source insd
Topology circular
Length 49457 bp
GC Content 0.51 %
Created at NCBI Jan. 10, 2022



Assembly

Genome Data Information

Accession GCF_021397945.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 24394354

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query Homo sapiens,anal swab specimens
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP124706.1 See Comparison
NZ_MH909341.1 See Comparison
NZ_MH909328.1 See Comparison
NZ_MH909337.1 See Comparison
NZ_MH909339.1 See Comparison
NZ_MF072962.1 See Comparison
NZ_KT989598.1 See Comparison
NZ_KU862632.1 See Comparison
NZ_KU886034.1 See Comparison
NZ_KU051707.1 See Comparison
NZ_KT982618.1 See Comparison
NZ_KT982615.1 See Comparison
NZ_KT982617.1 See Comparison
NZ_KU726588.1 See Comparison
NZ_KT982614.1 See Comparison
NZ_KT989376.1 See Comparison
NZ_KT982616.1 See Comparison
NZ_KU051709.1 See Comparison
NZ_KU051708.1 See Comparison
NZ_KM977631.1 See Comparison
NZ_CP064181.1 See Comparison
NZ_CP059714.1 See Comparison
CP090265.1 See Comparison
NZ_CP096924.1 See Comparison
NZ_CP098781.1 See Comparison
NZ_CP052763.1 See Comparison
NZ_MH909337.1 See Comparison
NZ_CP028486.1 See Comparison
NZ_CP137172.1 See Comparison
NZ_CP124706.1 See Comparison
NZ_MH909339.1 See Comparison
NZ_KT989598.1 See Comparison
NZ_MH909341.1 See Comparison
NZ_MH909328.1 See Comparison
NZ_KU886034.1 See Comparison
NZ_KU051707.1 See Comparison
NZ_KT982618.1 See Comparison
NZ_KT982615.1 See Comparison
NZ_KT982617.1 See Comparison
NZ_KU862632.1 See Comparison
NZ_MF072962.1 See Comparison
NZ_CP096924.1 See Comparison
NZ_KT989376.1 See Comparison
NZ_KT982616.1 See Comparison
NZ_KU051709.1 See Comparison
NZ_KU051708.1 See Comparison
NZ_KM977631.1 See Comparison
NZ_KU726588.1 See Comparison
NZ_KT982614.1 See Comparison
NZ_CP064181.1 See Comparison
NZ_CP059714.1 See Comparison
NZ_CP098781.1 See Comparison
CP090265.1 See Comparison
NZ_CP028486.1 See Comparison
NZ_CP052763.1 See Comparison
NZ_CP137172.1 See Comparison
NZ_MF072962.1 See Comparison
NZ_CP124706.1 See Comparison
NZ_MH909339.1 See Comparison
NZ_MH909341.1 See Comparison
NZ_MH909328.1 See Comparison
NZ_MH909337.1 See Comparison
NZ_KT989376.1 See Comparison
NZ_KT989598.1 See Comparison
NZ_KU862632.1 See Comparison
NZ_KU051707.1 See Comparison
NZ_KT982616.1 See Comparison
NZ_KU051709.1 See Comparison
NZ_KT982618.1 See Comparison
NZ_KU886034.1 See Comparison
NZ_KU051708.1 See Comparison
NZ_KT982615.1 See Comparison
NZ_KT982617.1 See Comparison
NZ_KM977631.1 See Comparison
NZ_KU726588.1 See Comparison
NZ_KT982614.1 See Comparison
NZ_CP064181.1 See Comparison
NZ_CP059714.1 See Comparison
NZ_CP096924.1 See Comparison
NZ_CP098781.1 See Comparison
CP090265.1 See Comparison
NZ_CP124706.1 See Comparison
NZ_CP052763.1 See Comparison
NZ_CP028486.1 See Comparison
NZ_CP137172.1 See Comparison
NZ_MF072962.1 See Comparison
NZ_MH909339.1 See Comparison
NZ_KU051707.1 See Comparison
NZ_KT982618.1 See Comparison
NZ_MH909341.1 See Comparison
NZ_MH909328.1 See Comparison
NZ_MH909337.1 See Comparison
NZ_KU051709.1 See Comparison
NZ_KT989598.1 See Comparison
NZ_KU862632.1 See Comparison
NZ_KT982615.1 See Comparison
NZ_KT982617.1 See Comparison
NZ_KU051708.1 See Comparison
NZ_KU726588.1 See Comparison
NZ_KT982614.1 See Comparison
NZ_KT989376.1 See Comparison
NZ_KT982616.1 See Comparison
NZ_KU886034.1 See Comparison
NZ_KM977631.1 See Comparison
NZ_CP059714.1 See Comparison
NZ_CP064181.1 See Comparison
NZ_CP096924.1 See Comparison
CP090265.1 See Comparison
NZ_CP098781.1 See Comparison
NZ_CP124706.1 See Comparison
NZ_CP028486.1 See Comparison
NZ_CP137172.1 See Comparison
NZ_CP052763.1 See Comparison
NZ_MF072962.1 See Comparison
NZ_MH909341.1 See Comparison
NZ_MH909328.1 See Comparison
NZ_MH909337.1 See Comparison
NZ_MH909339.1 See Comparison
NZ_KT982618.1 See Comparison
NZ_KT982615.1 See Comparison
NZ_KU051708.1 See Comparison
NZ_KT982617.1 See Comparison
NZ_KU726588.1 See Comparison
NZ_KT982614.1 See Comparison
NZ_KT989376.1 See Comparison
NZ_KT982616.1 See Comparison
NZ_KU051709.1 See Comparison
NZ_KT989598.1 See Comparison
NZ_KU862632.1 See Comparison
NZ_KU886034.1 See Comparison
NZ_KU051707.1 See Comparison
NZ_KM977631.1 See Comparison
NZ_CP059714.1 See Comparison
NZ_CP064181.1 See Comparison
NZ_CP096924.1 See Comparison
NZ_CP052763.1 See Comparison
CP090265.1 See Comparison
NZ_CP098781.1 See Comparison
NZ_KU726588.1 See Comparison
NZ_CP028486.1 See Comparison
NZ_CP137172.1 See Comparison
NZ_MH909341.1 See Comparison
NZ_MH909328.1 See Comparison
NZ_MF072962.1 See Comparison
NZ_CP124706.1 See Comparison
NZ_MH909337.1 See Comparison
NZ_MH909339.1 See Comparison
NZ_KT989598.1 See Comparison
NZ_KU862632.1 See Comparison
NZ_KT982614.1 See Comparison
NZ_KT989376.1 See Comparison
NZ_KU886034.1 See Comparison
NZ_KM977631.1 See Comparison
NZ_KT982616.1 See Comparison
NZ_KU051709.1 See Comparison
NZ_KU051707.1 See Comparison
NZ_KU051708.1 See Comparison
NZ_KT982618.1 See Comparison
NZ_KT982615.1 See Comparison
NZ_KT982617.1 See Comparison
NZ_CP064181.1 See Comparison
NZ_CP059714.1 See Comparison
NZ_CP098781.1 See Comparison
NZ_CP096924.1 See Comparison
NZ_CP028486.1 See Comparison
CP090265.1 See Comparison
CP090255.1 See Comparison
NZ_CP052763.1 See Comparison
NZ_CP137172.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore