Plasmid NZ_KX711879.1
Sequence
Nucleotide Information
| Accession | NZ_KX711879.1 |
|---|---|
| Description | Pseudomonas aeruginosa strain P378 plasmid P378-IMP, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 51207 bp |
| GC Content | 0.50 % |
| Created at NCBI | June 3, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Pseudomonas aeruginosa (287) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Pseudomonadales (72274) |
| Family | Pseudomonadaceae (135621) |
| Genus | Pseudomonas (286) |
| Species | Pseudomonas_aeruginosa (287) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14227026 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 34.41/86.03 |
| Address | China |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | qnrS1 | copy | ||
| amrfinderplus | blaIMP-4 | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | recombinase family protein | copy | ||
| PGAG | IS6-like element IS26 family transposase | copy | ||
| PGAG | subclass B1 metallo-beta-lactamase IMP-4 | copy | ||
| PGAG | ltrA | copy | ||
| PGAG | IS6-like element IS6100 family transposase | copy | ||
| PGAG | type II site-specific deoxyribonuclease | copy | ||
| PGAG | DNA cytosine methyltransferase | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 67 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_009131_00030 | MPF_T | 15425 | 15739 | plus | 100 | 100 | 6.62e-63 | 212 |
| mate-pair-formation | NC_011617_00041 | MPF_T | 15742 | 18339 | plus | 100 | 100 | 0 | 1811 |
| mate-pair-formation | NC_014368_00014 | MPF_T | 19324 | 20361 | plus | 99.422 | 100 | 3.38e-180 | 560 |
| mate-pair-formation | NC_007682_00044 | MPF_T | 20583 | 21278 | plus | 100 | 100 | 1e-154 | 481 |
| mate-pair-formation | NC_008612_00190 | MPF_T | 21292 | 22173 | plus | 100 | 100 | 1.2e-176 | 547 |
| mate-pair-formation | NC_022375_00024 | MPF_T | 36023 | 37549 | minus | 99.607 | 100 | 0 | 993 |
| oriT | NZ_CP016498 | MOBF | 38029 | 38296 | minus | 100 | 100 | 8.36e-138 | 496 |
| replicon | 000153__NC_019087_00001 | IncN | 75 | 794 | plus | 99.583 | 100 | 0 | 1314 |
| relaxase | NC_015599_00019 | MOBF | 32844 | 36020 | minus | 99.717 | 98 | 0 | 2031 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 9 of 9 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |