Plasmid NZ_CP028486.1

Sequence

Nucleotide Information

Accession	NZ_CP028486.1
Description	Escherichia coli strain E41-1 plasmid p3, complete sequence
Source	refseq
Topology	circular
Length	52864 bp
GC Content	0.51 %
Created at NCBI	June 8, 2018

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_003194345.1
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	8382661

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China,Shanghai
Original Query Type	name
Coordinates (Lat/Lon)	31.23/121.49
Address	China,Shanghai

ECOSYSTEM

Original Query	Homo sapiens,sputum
Classification	host_associated,respiratory_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP137172.1	See Comparison
NZ_CP124706.1	See Comparison
NZ_CP096924.1	See Comparison
NZ_MH909341.1	See Comparison
NZ_MH909328.1	See Comparison
NZ_MH909336.1	See Comparison
NZ_MH909334.1	See Comparison
NZ_MH909337.1	See Comparison
NZ_MH909339.1	See Comparison
NZ_MH727565.1	See Comparison
NZ_MF072962.1	See Comparison
NZ_KX711879.1	See Comparison
NZ_KT989598.1	See Comparison
NZ_KU051710.1	See Comparison
NZ_KU862632.1	See Comparison
NZ_KU886034.1	See Comparison
NZ_KT982613.1	See Comparison
NZ_KU051707.1	See Comparison
NZ_KT982618.1	See Comparison
NZ_KT982615.1	See Comparison
NZ_KT982617.1	See Comparison
NZ_KU726588.1	See Comparison
NZ_KT982614.1	See Comparison
NZ_KT989376.1	See Comparison
NZ_KT982616.1	See Comparison
NZ_KU051709.1	See Comparison
NZ_KU051708.1	See Comparison
NZ_KM977631.1	See Comparison
NZ_CP064181.1	See Comparison
NZ_CP059714.1	See Comparison
NZ_ON882014.1	See Comparison
NZ_CP124706.1	See Comparison
NZ_CP098781.1	See Comparison
CP090265.1	See Comparison
CP090255.1	See Comparison
NZ_CP052763.1	See Comparison
NZ_MZ643942.1	See Comparison
NZ_CP137172.1	See Comparison
NZ_CP098781.1	See Comparison
NZ_MH909341.1	See Comparison
NZ_MH909328.1	See Comparison
NZ_MH909336.1	See Comparison
NZ_MH909334.1	See Comparison
NZ_MH909337.1	See Comparison
NZ_MH909339.1	See Comparison
NZ_MH727565.1	See Comparison
NZ_MF072962.1	See Comparison
NZ_KX711879.1	See Comparison
NZ_KT989598.1	See Comparison
NZ_KU051710.1	See Comparison
NZ_KU862632.1	See Comparison
NZ_KU886034.1	See Comparison
NZ_KT982613.1	See Comparison
NZ_KU051707.1	See Comparison
NZ_KT982618.1	See Comparison
NZ_KT982615.1	See Comparison
NZ_KT982617.1	See Comparison
NZ_KU726588.1	See Comparison
NZ_KT982614.1	See Comparison
NZ_KT989376.1	See Comparison
NZ_KT982616.1	See Comparison
NZ_KU051709.1	See Comparison
NZ_KU051708.1	See Comparison
NZ_KM977631.1	See Comparison
NZ_CP064181.1	See Comparison
NZ_CP059714.1	See Comparison
NZ_CP096924.1	See Comparison
NZ_ON882014.1	See Comparison
NZ_MZ643942.1	See Comparison
CP090265.1	See Comparison
CP090255.1	See Comparison
NZ_MH727565.1	See Comparison
NZ_CP052763.1	See Comparison
NZ_CP124706.1	See Comparison
NZ_CP137172.1	See Comparison
NZ_MH909341.1	See Comparison
NZ_MH909328.1	See Comparison
NZ_MH909336.1	See Comparison
NZ_MH909334.1	See Comparison
NZ_MH909337.1	See Comparison
NZ_MH909339.1	See Comparison
NZ_MF072962.1	See Comparison
NZ_KX711879.1	See Comparison
NZ_KT989598.1	See Comparison
NZ_KU051710.1	See Comparison
NZ_KU726588.1	See Comparison
NZ_KU862632.1	See Comparison
NZ_KU886034.1	See Comparison
NZ_KT982613.1	See Comparison
NZ_KU051707.1	See Comparison
NZ_KT982618.1	See Comparison
NZ_KT982615.1	See Comparison
NZ_KT982617.1	See Comparison
NZ_KT982614.1	See Comparison
NZ_KT989376.1	See Comparison
NZ_KM977631.1	See Comparison
NZ_KT982616.1	See Comparison
NZ_KU051709.1	See Comparison
NZ_KU051708.1	See Comparison
NZ_CP124706.1	See Comparison
NZ_CP098781.1	See Comparison
CP090265.1	See Comparison
CP090255.1	See Comparison
NZ_CP064181.1	See Comparison
NZ_CP059714.1	See Comparison
NZ_CP096924.1	See Comparison
NZ_ON882014.1	See Comparison
NZ_MZ643942.1	See Comparison
NZ_CP052763.1	See Comparison
NZ_CP137172.1	See Comparison
NZ_MH909328.1	See Comparison
NZ_MH909336.1	See Comparison
NZ_MH909334.1	See Comparison
NZ_MH909337.1	See Comparison
NZ_MH909339.1	See Comparison
NZ_KT989598.1	See Comparison
NZ_MH909341.1	See Comparison
NZ_MH727565.1	See Comparison
NZ_KU051710.1	See Comparison
NZ_KU862632.1	See Comparison
NZ_MF072962.1	See Comparison
NZ_KU886034.1	See Comparison
NZ_KT982613.1	See Comparison
NZ_KU051707.1	See Comparison
NZ_KT982618.1	See Comparison
NZ_KT982615.1	See Comparison
NZ_KT982617.1	See Comparison
NZ_KX711879.1	See Comparison
NZ_KM977631.1	See Comparison
NZ_KU726588.1	See Comparison
NZ_KT982614.1	See Comparison
NZ_CP064181.1	See Comparison
NZ_KT989376.1	See Comparison
NZ_KT982616.1	See Comparison
NZ_KU051709.1	See Comparison
NZ_KU051708.1	See Comparison
NZ_MZ643942.1	See Comparison
NZ_CP096924.1	See Comparison
NZ_ON882014.1	See Comparison
CP090265.1	See Comparison
CP090255.1	See Comparison
NZ_CP059714.1	See Comparison
NZ_CP098781.1	See Comparison
NZ_CP052763.1	See Comparison
NZ_CP137172.1	See Comparison
NZ_CP124706.1	See Comparison
NZ_CP064181.1	See Comparison
NZ_MH909341.1	See Comparison
NZ_MH727565.1	See Comparison
NZ_MF072962.1	See Comparison
NZ_KX711879.1	See Comparison
NZ_KT989598.1	See Comparison
NZ_KU051710.1	See Comparison
NZ_KU862632.1	See Comparison
NZ_KU886034.1	See Comparison
NZ_KT982613.1	See Comparison
NZ_KU051707.1	See Comparison
NZ_KT982618.1	See Comparison
NZ_KT982615.1	See Comparison
NZ_KT982617.1	See Comparison
NZ_KU726588.1	See Comparison
NZ_KT982614.1	See Comparison
NZ_KT989376.1	See Comparison
NZ_KT982616.1	See Comparison
NZ_KU051709.1	See Comparison
NZ_KU051708.1	See Comparison
NZ_KM977631.1	See Comparison
NZ_CP096924.1	See Comparison
NZ_MH909328.1	See Comparison
NZ_MH909336.1	See Comparison
NZ_MH909334.1	See Comparison
NZ_MH909337.1	See Comparison
NZ_MH909339.1	See Comparison
NZ_CP059714.1	See Comparison
NZ_CP098781.1	See Comparison
NZ_ON882014.1	See Comparison
NZ_CP028486.1	See Comparison
CP090265.1	See Comparison
CP090255.1	See Comparison
NZ_MZ643942.1	See Comparison
NZ_CP052763.1	See Comparison
NZ_CP124706.1	See Comparison
NZ_CP137172.1	See Comparison
NZ_CP059714.1	See Comparison
NZ_MH909341.1	See Comparison
NZ_MH909328.1	See Comparison
NZ_MH909336.1	See Comparison
NZ_MH909334.1	See Comparison
NZ_MH909337.1	See Comparison
NZ_MH909339.1	See Comparison
NZ_MH727565.1	See Comparison
NZ_MF072962.1	See Comparison
NZ_KX711879.1	See Comparison
NZ_KT989598.1	See Comparison
NZ_KU051710.1	See Comparison
NZ_KU862632.1	See Comparison
NZ_KU886034.1	See Comparison
NZ_KT982613.1	See Comparison
NZ_KU051707.1	See Comparison
NZ_KT982618.1	See Comparison
NZ_KT982615.1	See Comparison
NZ_KT982617.1	See Comparison
NZ_KU726588.1	See Comparison
NZ_KT982614.1	See Comparison
NZ_KT989376.1	See Comparison
NZ_KT982616.1	See Comparison
NZ_KU051709.1	See Comparison
NZ_KU051708.1	See Comparison
NZ_KM977631.1	See Comparison
NZ_CP064181.1	See Comparison
NZ_CP096924.1	See Comparison
NZ_MZ643942.1	See Comparison
NZ_ON882014.1	See Comparison
NZ_CP098781.1	See Comparison
CP090265.1	See Comparison
CP090255.1	See Comparison
NZ_CP052763.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore