Plasmid NZ_CP052762.1

Sequence

Nucleotide Information

Accession NZ_CP052762.1
Description Klebsiella pneumoniae strain XH210 plasmid pXH210-AMV, complete sequence
Source refseq
Topology circular
Length 272742 bp
GC Content 0.52 %
Created at NCBI April 28, 2020



Assembly

Genome Data Information

Accession GCF_001699105.2
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 3252408

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.256769N;120.201838E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.26/120.20
Address Hanghai Road, 钱杭社区, Sijiqing, Shangcheng District, Hangzhou City, Zhejiang, 310026, China

ECOSYSTEM
Original Query Homo sapiens,blood from patient with pneumonia
Classification blood,circulatory_system,disease,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Pneumonia due to Klebsiella pneumoniae
DOID/SYMP
  • Klebsiella pneumonia (DOID:13272 )
    • A bacterial pneumonia involving Klebsiella pneumoniae infection. Patients with Klebsiella pneumonia tend to cough up a characteristic sputum that is said to resemble red-currant jelly. Klebsiella pneumonia tends to affect people with underlying diseases, such as alcoholism, diabetes and chronic lung disease. The symptoms include high fever, rigors and pleuritic pain, and hemoptysis.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LR890617.1 See Comparison
NZ_CP064247.1 See Comparison
CP110591.1 See Comparison
NZ_CP087646.1 See Comparison
MG764551.1 See Comparison
NZ_CP142388.1 See Comparison
CP052173.1 See Comparison
NZ_LR890617.1 See Comparison
NZ_CP064247.1 See Comparison
MG764551.1 See Comparison
NZ_CP087646.1 See Comparison
CP052570.1 See Comparison
CP052534.1 See Comparison
CP110591.1 See Comparison
NZ_CP064247.1 See Comparison
NZ_CP142388.1 See Comparison
CP052173.1 See Comparison
NZ_LR890617.1 See Comparison
CP052570.1 See Comparison
CP052534.1 See Comparison
CP052570.1 See Comparison
NZ_CP142388.1 See Comparison
CP110591.1 See Comparison
NZ_CP087646.1 See Comparison
MG764551.1 See Comparison
CP052534.1 See Comparison
NZ_LR890617.1 See Comparison
CP052173.1 See Comparison
CP110591.1 See Comparison
NZ_CP064247.1 See Comparison
MG764551.1 See Comparison
NZ_CP087646.1 See Comparison
CP052570.1 See Comparison
NZ_CP142388.1 See Comparison
CP052534.1 See Comparison
CP052173.1 See Comparison
NZ_LR890617.1 See Comparison
NZ_CP064247.1 See Comparison
NZ_CP064247.1 See Comparison
NZ_CP087646.1 See Comparison
NZ_CP142388.1 See Comparison
CP052173.1 See Comparison
NZ_LR890617.1 See Comparison
CP110591.1 See Comparison
NZ_CP052762.1 See Comparison
MG764551.1 See Comparison
CP052570.1 See Comparison
CP052534.1 See Comparison
CP110591.1 See Comparison
NZ_CP087646.1 See Comparison
MG764551.1 See Comparison
NZ_CP142388.1 See Comparison
CP052570.1 See Comparison
CP052534.1 See Comparison
CP052173.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore