Plasmid NZ_CP107133.1

Sequence

Nucleotide Information

Accession NZ_CP107133.1
Description Escherichia coli strain S7 plasmid pS7-S3K40-5, complete sequence
Source refseq
Topology circular
Length 1546 bp
GC Content 0.51 %
Created at NCBI Aug. 14, 2023



Assembly

Genome Data Information

Accession GCF_030708235.1
Assembly Coverage 1326


Biosample

Curated Collection Information
Accession 31158880

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Sweden,Gothenburg
Original Query Type name
Coordinates (Lat/Lon) 57.71/11.97
Address Sweden,Gothenburg

ECOSYSTEM
Original Query Urine,human
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity


  • Sequence
    • Accession: CP048862.1
    • Description: Escherichia coli strain US29 plasmid pUS29_2, complete sequence
    • Source: insd
    • Created at NCBI: Aug. 10, 2020

  • Host Taxonomy
    Assigned Host: Escherichia coli (562)
  • Biosample
    Accession: 13423073
  • GEOGRAPHICAL INFORMATION
    • Original Query: 51.16N;4.41E
    • Original Query Type: coordinates
    • Address: Campus Drie Eiken Universiteit Antwerpen, Edegemsesteenweg, Wilrijk, Antwerp, Flanders, 2610, Belgium
    • Coordinates (Lat/Lon): 51.16/4.41
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Urosepsis
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore