Plasmid CP047536.1

Sequence

Nucleotide Information

Accession CP047536.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10452 plasmid unnamed, complete sequence
Source insd
Topology circular
Length 243126 bp
GC Content 0.46 %
Created at NCBI Jan. 9, 2020



Assembly

Genome Data Information

Accession GCF_004324035.2
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 9759461

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.23N;121.47E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.23/121.47
Address People's Square, 120, People's Avenue, Jiangyin, Nanjingdonglu Subdistrict, Shanghai, Huangpu District, Shanghai, 200001, China

ECOSYSTEM
Original Query feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

KM877269.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_KT334335.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_CP098835.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP090530.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_CP047541.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
CP047536.1 See Comparison
KM877269.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_CP047541.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_CP090530.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_KT334335.1 See Comparison
NZ_CP098835.1 See Comparison
NZ_CP090530.1 See Comparison
KM877269.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_KT334335.1 See Comparison
NZ_CP098835.1 See Comparison
NZ_CP047541.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
KM877269.1 See Comparison
NZ_CP098835.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_KT334335.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_KY019258.1 See Comparison
KM877269.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_CP047541.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
NZ_CP090530.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_CP090530.1 See Comparison
NZ_KT334335.1 See Comparison
NZ_CP098835.1 See Comparison
NZ_KT334335.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_CP047541.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
KM877269.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_CP098835.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_CP090530.1 See Comparison
NZ_CP047541.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore