Plasmid NZ_KT334335.1

Sequence

Nucleotide Information

Accession NZ_KT334335.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain ST06-53 plasmid pHK0653, complete sequence
Source refseq
Topology circular
Length 244851 bp
GC Content 0.46 %
Created at NCBI June 3, 2020



Biosample

Curated Collection Information
Accession 14226360

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Hong Kong
Original Query Type name
Coordinates (Lat/Lon) 22.35/114.18
Address Hong Kong

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP098835.1 See Comparison
NZ_CP090530.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
CP047536.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_CP041174.1 See Comparison
KM877269.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_CP090530.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_CP098835.1 See Comparison
KM877269.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
CP047536.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_CP098835.1 See Comparison
NZ_CP090530.1 See Comparison
CP047536.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
KM877269.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP133488.1 See Comparison
CP047536.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_CP090530.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_CP098835.1 See Comparison
KM877269.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_KT334335.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_CP098835.1 See Comparison
NZ_CP090530.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
KM877269.1 See Comparison
CP047536.1 See Comparison
NZ_CP098835.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_KY019259.1 See Comparison
KM877269.1 See Comparison
NZ_CP047551.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047547.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
CP047536.1 See Comparison
NZ_CP090530.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_KY019259.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore