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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP047541.1
Sequence
Nucleotide Information
Accession
NZ_CP047541.1
Description
Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10359 plasmid unnamed, complete sequence
Source
refseq
Topology
circular
Length
232064 bp
GC Content
0.46 %
Created at NCBI
Jan. 9, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica (90371)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Assembly
Genome Data Information
Accession
GCF_004324045.2
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
9759459
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
31.23N;121.47E
Original Query Type
coordinates
Coordinates (Lat/Lon)
31.23/121.47
Address
People's Square, 120, People's Avenue, Jiangyin, Nanjingdonglu Subdistrict, Shanghai, Huangpu District, Shanghai, 200001, China
ECOSYSTEM
Original Query
feces
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Similar Plasmids
based on Mash distance
NZ_LT795115.1
See Comparison
NZ_CP133488.1
See Comparison
NZ_KY019258.1
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NZ_KY019259.1
See Comparison
NZ_CP047551.1
See Comparison
NZ_CP090530.1
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NZ_CP098835.1
See Comparison
NZ_CP047541.1
See Comparison
NZ_CP047528.1
See Comparison
NZ_CP047549.1
See Comparison
NZ_CP047526.1
See Comparison
NZ_CP047556.1
See Comparison
CP047536.1
See Comparison
NZ_CP133488.1
See Comparison
NZ_LT795115.1
See Comparison
NZ_CP090530.1
See Comparison
NZ_KY019259.1
See Comparison
NZ_CP098835.1
See Comparison
NZ_KY019258.1
See Comparison
CP047536.1
See Comparison
NZ_CP047551.1
See Comparison
NZ_CP047528.1
See Comparison
NZ_CP047549.1
See Comparison
NZ_CP047526.1
See Comparison
NZ_CP047556.1
See Comparison
NZ_KY019258.1
See Comparison
NZ_LT795115.1
See Comparison
NZ_KY019259.1
See Comparison
NZ_CP133488.1
See Comparison
CP047536.1
See Comparison
NZ_CP090530.1
See Comparison
NZ_CP098835.1
See Comparison
NZ_LT795115.1
See Comparison
NZ_CP047551.1
See Comparison
NZ_CP047528.1
See Comparison
NZ_CP047549.1
See Comparison
NZ_CP047526.1
See Comparison
NZ_CP047556.1
See Comparison
NZ_CP133488.1
See Comparison
NZ_KY019258.1
See Comparison
NZ_KY019259.1
See Comparison
NZ_CP090530.1
See Comparison
NZ_CP098835.1
See Comparison
NZ_KY019259.1
See Comparison
NZ_LT795115.1
See Comparison
NZ_CP133488.1
See Comparison
NZ_CP047551.1
See Comparison
NZ_CP047528.1
See Comparison
NZ_CP047549.1
See Comparison
NZ_CP047526.1
See Comparison
NZ_CP047556.1
See Comparison
CP047536.1
See Comparison
NZ_CP098835.1
See Comparison
NZ_KY019258.1
See Comparison
NZ_CP047551.1
See Comparison
NZ_CP090530.1
See Comparison
NZ_CP047528.1
See Comparison
NZ_CP047549.1
See Comparison
NZ_CP047526.1
See Comparison
NZ_CP047556.1
See Comparison
CP047536.1
See Comparison
NZ_KY019259.1
See Comparison
NZ_LT795115.1
See Comparison
NZ_CP133488.1
See Comparison
NZ_KY019258.1
See Comparison
NZ_CP098835.1
See Comparison
NZ_CP090530.1
See Comparison
NZ_CP047551.1
See Comparison
NZ_CP047528.1
See Comparison
NZ_CP047549.1
See Comparison
NZ_CP047526.1
See Comparison
CP047536.1
See Comparison
NZ_CP047556.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore