Plasmid NZ_CP116164.1

Sequence

Nucleotide Information

Accession NZ_CP116164.1
Description Escherichia coli strain DETEC-P351 plasmid pDETEC9, complete sequence
Source refseq
Topology circular
Length 3684 bp
GC Content 0.46 %
Created at NCBI Jan. 25, 2023



Assembly

Genome Data Information

Accession GCF_027944875.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 31988454

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Guangzhou
Original Query Type name
Coordinates (Lat/Lon) 23.13/113.26
Address China,Guangzhou

ECOSYSTEM
Original Query whole organism,ICU patient rectal swab
Classification disease,gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP048375.1 See Comparison
NZ_CP048369.1 See Comparison
NZ_CP093287.1 See Comparison
NZ_CP082131.1 See Comparison
NZ_CP092978.1 See Comparison
NZ_CP060871.1 See Comparison
NZ_CP043283.1 See Comparison
NZ_CP036182.1 See Comparison
NZ_CP029114.1 See Comparison
NZ_CP026573.2 See Comparison
NZ_CP133457.1 See Comparison
NZ_CP110121.1 See Comparison
NZ_CP128793.1 See Comparison
NZ_CP048369.1 See Comparison
NZ_CP082131.1 See Comparison
NZ_CP060871.1 See Comparison
NZ_CP043283.1 See Comparison
NZ_CP048375.1 See Comparison
NZ_CP093287.1 See Comparison
NZ_CP092978.1 See Comparison
NZ_CP029114.1 See Comparison
NZ_CP036182.1 See Comparison
NZ_CP026573.2 See Comparison
NZ_CP133457.1 See Comparison
NZ_CP110121.1 See Comparison
NZ_CP128793.1 See Comparison
NZ_CP048375.1 See Comparison
NZ_CP048369.1 See Comparison
NZ_CP082131.1 See Comparison
NZ_CP093287.1 See Comparison
NZ_CP092978.1 See Comparison
NZ_CP060871.1 See Comparison
NZ_CP043283.1 See Comparison
NZ_CP029114.1 See Comparison
NZ_CP026573.2 See Comparison
NZ_CP036182.1 See Comparison
NZ_CP116164.1 See Comparison
NZ_CP110121.1 See Comparison
NZ_CP048369.1 See Comparison
NZ_CP133457.1 See Comparison
NZ_CP128793.1 See Comparison
NZ_CP048375.1 See Comparison
NZ_CP093287.1 See Comparison
NZ_CP092978.1 See Comparison
NZ_CP026573.2 See Comparison
NZ_CP082131.1 See Comparison
NZ_CP060871.1 See Comparison
NZ_CP043283.1 See Comparison
NZ_CP036182.1 See Comparison
NZ_CP133457.1 See Comparison
NZ_CP029114.1 See Comparison
NZ_CP060871.1 See Comparison
NZ_CP128793.1 See Comparison
NZ_CP110121.1 See Comparison
NZ_CP048375.1 See Comparison
NZ_CP048369.1 See Comparison
NZ_CP043283.1 See Comparison
NZ_CP093287.1 See Comparison
NZ_CP029114.1 See Comparison
NZ_CP082131.1 See Comparison
NZ_CP092978.1 See Comparison
NZ_CP036182.1 See Comparison
NZ_CP026573.2 See Comparison
NZ_CP128793.1 See Comparison
NZ_CP133457.1 See Comparison
NZ_CP093287.1 See Comparison
NZ_CP110121.1 See Comparison
NZ_CP048375.1 See Comparison
NZ_CP048369.1 See Comparison
NZ_CP092978.1 See Comparison
NZ_CP060871.1 See Comparison
NZ_CP043283.1 See Comparison
NZ_CP082131.1 See Comparison
NZ_CP036182.1 See Comparison
NZ_CP026573.2 See Comparison
NZ_CP133457.1 See Comparison
NZ_CP128793.1 See Comparison
NZ_CP110121.1 See Comparison
NZ_CP029114.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore