Plasmid NZ_CP026573.2

Sequence

Nucleotide Information

Accession	NZ_CP026573.2
Description	Escherichia coli strain WCHEC005237 plasmid p2_005237, complete sequence
Source	refseq
Topology	circular
Length	3684 bp
GC Content	0.46 %
Created at NCBI	March 1, 2018

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_002945135.3
Assembly Coverage	200

Biosample

Curated Collection Information

Accession	6209723

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China,Sichuan,Chengdu
Original Query Type	name
Coordinates (Lat/Lon)	30.68/104.06
Address	China,Sichuan,Chengdu

ECOSYSTEM

Original Query	Homo sapiens,Culture,Rectal swab
Classification	cell_culture,gastrointestinal_system,host_associated,rectal
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP093287.1	See Comparison
NZ_CP092978.1	See Comparison
NZ_CP060871.1	See Comparison
NZ_CP043283.1	See Comparison
NZ_CP082131.1	See Comparison
NZ_CP128793.1	See Comparison
NZ_CP036182.1	See Comparison
NZ_CP029114.1	See Comparison
NZ_CP133457.1	See Comparison
NZ_CP048369.1	See Comparison
NZ_CP110121.1	See Comparison
NZ_CP093287.1	See Comparison
NZ_CP048375.1	See Comparison
NZ_CP116164.1	See Comparison
NZ_CP092978.1	See Comparison
NZ_CP060871.1	See Comparison
NZ_CP043283.1	See Comparison
NZ_CP133457.1	See Comparison
NZ_CP082131.1	See Comparison
NZ_CP036182.1	See Comparison
NZ_CP029114.1	See Comparison
NZ_CP128793.1	See Comparison
NZ_CP116164.1	See Comparison
NZ_CP048369.1	See Comparison
NZ_CP110121.1	See Comparison
NZ_CP048375.1	See Comparison
NZ_CP093287.1	See Comparison
NZ_CP092978.1	See Comparison
NZ_CP060871.1	See Comparison
NZ_CP043283.1	See Comparison
NZ_CP082131.1	See Comparison
NZ_CP029114.1	See Comparison
NZ_CP036182.1	See Comparison
NZ_CP133457.1	See Comparison
NZ_CP110121.1	See Comparison
NZ_CP128793.1	See Comparison
NZ_CP092978.1	See Comparison
NZ_CP048369.1	See Comparison
NZ_CP116164.1	See Comparison
NZ_CP048375.1	See Comparison
NZ_CP060871.1	See Comparison
NZ_CP082131.1	See Comparison
NZ_CP043283.1	See Comparison
NZ_CP093287.1	See Comparison
NZ_CP026573.2	See Comparison
NZ_CP036182.1	See Comparison
NZ_CP133457.1	See Comparison
NZ_CP029114.1	See Comparison
NZ_CP060871.1	See Comparison
NZ_CP116164.1	See Comparison
NZ_CP093287.1	See Comparison
NZ_CP128793.1	See Comparison
NZ_CP110121.1	See Comparison
NZ_CP048375.1	See Comparison
NZ_CP048369.1	See Comparison
NZ_CP043283.1	See Comparison
NZ_CP082131.1	See Comparison
NZ_CP092978.1	See Comparison
NZ_CP029114.1	See Comparison
NZ_CP036182.1	See Comparison
NZ_CP128793.1	See Comparison
NZ_CP133457.1	See Comparison
NZ_CP110121.1	See Comparison
NZ_CP093287.1	See Comparison
NZ_CP048375.1	See Comparison
NZ_CP048369.1	See Comparison
NZ_CP116164.1	See Comparison
NZ_CP092978.1	See Comparison
NZ_CP082131.1	See Comparison
NZ_CP060871.1	See Comparison
NZ_CP043283.1	See Comparison
NZ_CP036182.1	See Comparison
NZ_CP133457.1	See Comparison
NZ_CP029114.1	See Comparison
NZ_CP116164.1	See Comparison
NZ_CP110121.1	See Comparison
NZ_CP048375.1	See Comparison
NZ_CP048369.1	See Comparison
NZ_CP128793.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore