Plasmid NZ_CP029976.1

Sequence

Nucleotide Information

Accession NZ_CP029976.1
Description Escherichia coli strain 51008369SK1 plasmid p51008369SK1_C, complete sequence
Source refseq
Topology circular
Length 33826 bp
GC Content 0.42 %
Created at NCBI June 22, 2018



Assembly

Genome Data Information

Accession GCF_003254065.1
Assembly Coverage 400


Biosample

Curated Collection Information
Accession 9381942

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 47.22N;8.33E
Original Query Type coordinates
Coordinates (Lat/Lon) 47.22/8.33
Address 62, Galizzi, Beinwil (Freiamt), Bezirk Muri, Aargau, 5637, Switzerland

ECOSYSTEM
Original Query Dog,wound liquid
Classification host_associated,wound
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query wounded
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP126781.1 See Comparison
NZ_OR095747.1 See Comparison
NZ_CP104633.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_CP145144.1 See Comparison
OW969627.1 See Comparison
NZ_CP035754.1 See Comparison
NZ_OP242313.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_CP086496.1 See Comparison
NZ_CP086535.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP086506.1 See Comparison
NZ_CP086516.1 See Comparison
NZ_CP029976.1 See Comparison
NZ_CP086547.1 See Comparison
NZ_CP086476.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP086486.1 See Comparison
CP088731.1 See Comparison
CP083384.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_OR095747.1 See Comparison
NZ_CP104633.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_CP145144.1 See Comparison
NZ_CP035754.1 See Comparison
OW969627.1 See Comparison
NZ_OP242313.1 See Comparison
CP083384.1 See Comparison
NZ_CP086547.1 See Comparison
NZ_CP086476.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP086486.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_CP086496.1 See Comparison
NZ_CP086535.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP086506.1 See Comparison
NZ_CP086516.1 See Comparison
CP088731.1 See Comparison
NZ_OP242313.1 See Comparison
NZ_OR095747.1 See Comparison
NZ_CP104633.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_CP145144.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_CP035754.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_CP086496.1 See Comparison
NZ_CP086535.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP086506.1 See Comparison
NZ_CP086516.1 See Comparison
NZ_OR095747.1 See Comparison
OW969627.1 See Comparison
NZ_CP086547.1 See Comparison
NZ_CP086476.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP086486.1 See Comparison
CP088731.1 See Comparison
CP083384.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_CP104633.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_CP145144.1 See Comparison
NZ_CP035754.1 See Comparison
NZ_OP242313.1 See Comparison
OW969627.1 See Comparison
NZ_CP086496.1 See Comparison
NZ_CP086535.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP086506.1 See Comparison
NZ_CP086516.1 See Comparison
NZ_CP104633.1 See Comparison
NZ_CP086547.1 See Comparison
NZ_CP086476.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP086486.1 See Comparison
CP088731.1 See Comparison
CP083384.1 See Comparison
NZ_OR095747.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_OR095747.1 See Comparison
NZ_CP145144.1 See Comparison
NZ_CP086496.1 See Comparison
NZ_CP086535.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP086506.1 See Comparison
NZ_CP086516.1 See Comparison
CP088731.1 See Comparison
CP083384.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_CP035754.1 See Comparison
NZ_OP242313.1 See Comparison
OW969627.1 See Comparison
NZ_CP086547.1 See Comparison
NZ_CP086476.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP086486.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_CP104633.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_CP145144.1 See Comparison
NZ_CP035754.1 See Comparison
NZ_OP242313.1 See Comparison
NZ_CP086547.1 See Comparison
OW969627.1 See Comparison
NZ_CP086476.1 See Comparison
NZ_CP086523.1 See Comparison
NZ_CP086486.1 See Comparison
NZ_CP086529.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP086506.1 See Comparison
NZ_CP086516.1 See Comparison
NZ_CP086496.1 See Comparison
NZ_CP086535.1 See Comparison
CP088731.1 See Comparison
CP083384.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore