Plasmid CP088731.1

Sequence

Nucleotide Information

Accession CP088731.1
Description Escherichia coli strain B16EC1060 plasmid pB16EC1060-2, complete sequence
Source insd
Topology circular
Length 33808 bp
GC Content 0.42 %
Created at NCBI Dec. 9, 2021



Assembly

Genome Data Information

Accession GCF_021132755.1
Assembly Coverage 301


Biosample

Curated Collection Information
Accession 23391578

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.68N;126.77E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.68/126.77
Address Gyeongui-ro, Daehwa-dong, 일산3동, Ilsanseo-gu, Goyang-si, 10374, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



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based on Mash distance

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NZ_CP086535.1 See Comparison
NZ_CP086541.1 See Comparison
NZ_CP086506.1 See Comparison
NZ_CP086516.1 See Comparison
CP083384.1 See Comparison
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OW969627.1 See Comparison
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NZ_CP145144.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_CP035754.1 See Comparison
NZ_CP086547.1 See Comparison
NZ_OP242313.1 See Comparison
OW969627.1 See Comparison
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CP083384.1 See Comparison
NZ_CP126781.1 See Comparison
NZ_OR095747.1 See Comparison
NZ_CP110120.1 See Comparison
NZ_CP147037.1 See Comparison
NZ_CP029976.1 See Comparison
NZ_CP035754.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore